Browse Element(s) Details


Os.52152.1.S1_at

Description gb:AK065346.1
DB_XREF= gi:32975364
TID=Os.52152.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013005L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005L22, full insert sequence.
FL= gb:AK065346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g174905/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17430Os.45902.1.A1_x_at11/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.45902.1.A1_at10/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.27538.1.S1_at9/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.10222.1.S1_x_at2/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.51841.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.727.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.56372.1.S1_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17440OsAffx.19717.1.S1_at11/1112+9996211..9996546hypothetical protein
LOC_Os12g17450OsAffx.435.1.S1_at1/1112+9997186..10001032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17460NANA12+10001210..10002253retrotransposon protein, putative, unclassified
LOC_Os12g17470OsAffx.31777.2.S1_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.31777.2.S1_x_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.1.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.5.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17480NANA12+10007910..10011703NB-ARC domain containing protein
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein
LOC_Os12g17500OsAffx.31779.1.S1_at11/1112+10019361..10020049hypothetical protein
LOC_Os12g17510OsAffx.22848.4.S1_at2/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.3.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.4.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17520OsAffx.31780.2.S1_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_x_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_s_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.21663.1.S1_at3/1112+10037579..10041323hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52152.1.S1_at--760--8231Chr12:10014826..10014850 (25 bp)
GGCAAAGCTTCGACGGTTACAGATT
LOC_Os12g17490
Os.52152.1.S1_at--1099--8011Chr12:10014781..10014805 (25 bp)
GGAGTCTAATGCAGGTTTCGAGTTC
LOC_Os12g17490
Os.52152.1.S1_at--566--6071Chr12:10014762..10014786 (25 bp)
GAGTTCAGTTTTCATCACCTCTCAA
LOC_Os12g17490
Os.52152.1.S1_at--718--8091Chr12:10014730..10014754 (25 bp)
GGACCTTCATGCCACGATTAGTTGT
LOC_Os12g17490
Os.52152.1.S1_at--635--651Chr12:10014656..10014680 (25 bp)
ATGCAGCTAGTATCCATCCTGGACA
LOC_Os12g17490
Os.52152.1.S1_at--280--10211Chr12:10014332..10014353 (22 bp)
TTTCAGGACCAGCAGATTGGCCAAC
NONE
Os.52152.1.S1_at--111--10851Chr12:10014316..10014340 (25 bp)
TTGGCCAACCACGTAATCTGATATA
NONE
Os.52152.1.S1_at--605--1011Chr12:10014231..10014255 (25 bp)
AGGTATTGTTTTCCCTCTAGAGACA
NONE
Os.52152.1.S1_at--1125--2931Chr12:10014172..10014196 (25 bp)
AAGGCGCGTGAGTTGCTAGTTCGAT
NONE
Os.52152.1.S1_at--728--6711Chr12:10014154..10014178 (25 bp)
GTTCGATTGATTGAGCTTGCTACCT
NONE
Os.52152.1.S1_at--82--5931Chr12:10014142..10014166 (25 bp)
GAGCTTGCTACCTGGCTATTTGTAT
NONE
Target Sequence 
GGCAAAGCTTCGACGGTTACAGATTCGGTTTAGAGCAGAGGAAATGGAGTCTAATGCAGGTTTCGAGTTCAGTTTTCATC
ACCTCTCAAGCCTGGAGGACCTTCATGCCACGATTAGTTGTTATAGAGCCACTAGAAGTAGCGTGGAGGCTGCAGAAGCT
GCCATCAGGAATGCAGCTAGTATCCATCCTGGACATCTAAAAGTTTCAATCATAAGAGAGTGGGAAAGCCGCATGGCGGG
GCTCAGAGAGAGATGAATCTTGAGTATAGAAATGATGTAAGGAGGATGTTCAGAAAGAGGACCAAATGGCAGTTTCTTCA
GATTTTAGAAGTCCTTTCAGGACCAGCAGATTGGCCAACCACGTAATCTGATATATAGAGGATTAGAATCAGAGATCCAT
ATCAGTGTCTGTCACAAGAATTAAGAAGCTATGCAAGGTATTGTTTTCCCTCTAGAGACAGGAATGGAATTCTTTTTAAT
GAATGAGTAGAGTCAAGGCGCGTGAGTTGCTAGTTCGATTGATTGAGCTTGCTACCTGGCTATTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis