Browse Element(s) Details


Os.52178.1.S1_at

Description gb:AK065463.1
DB_XREF= gi:32975481
TID=Os.52178.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013004M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013004M04, full insert sequence.
FL= gb:AK065463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g402001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40160OsAffx.22040.2.S1_at10/1112+24823818..24827253hypothetical protein
LOC_Os12g40160OsAffx.22040.1.S1_x_at1/1112+24823818..24827253hypothetical protein
LOC_Os12g40170OsAffx.7840.1.S1_at11/1112+24829250..24829504hypothetical protein
LOC_Os12g40180Os.50198.1.S1_at10/1112+24838217..24838785expressed protein
LOC_Os12g40190Os.27677.1.S1_at11/1112+24838938..24843663extra-large guanine nucleotide binding protein, putative, expressed
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein
LOC_Os12g40210OsAffx.7841.1.S1_at11/1112+24858494..24858930hypothetical protein
LOC_Os12g40220OsAffx.24119.1.S1_at3/1112+24865335..24865688hypothetical protein
LOC_Os12g40230OsAffx.25936.1.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.7.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.2.S1_x_at7/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.5.S1_x_at2/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40240OsAffx.20049.1.S1_x_at11/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_at5/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_x_at4/1112+24872172..24873881hypothetical protein
LOC_Os12g40250Os.10827.1.S1_x_at9/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40250Os.46055.2.S1_x_at6/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52178.1.S1_at--244--10432Chr12:23805124..23805148 (25 bp)
TTATCACACCACATCATCTGCATTG
NONE
Os.52178.1.S1_at--759--491Chr11:22780150..22780174 (25 bp)
ATCGGAGTTGGACATCGTTATCAGT
NONE
Os.52178.1.S1_at--998--2312Chr12:23805007..23805031 (25 bp)
AAAGGTCCATTATCATCACCATCAA
NONE
Os.52178.1.S1_at--781--8672Chr12:23804948..23804972 (25 bp)
TGTGAAGGACCTTCATCCTCTTCAT
NONE
Os.52178.1.S1_at--136--432Chr12:23804922..23804946 (25 bp)
ATCATATCCACATCTCCGAATCAGT
NONE
Os.52178.1.S1_at--918--3592Chr12:23804781..23804805 (25 bp)
CATTCTAGAGTTGCACGATTCGACA
NONE
Os.52178.1.S1_at--814--3892Chr12:23804739..23804763 (25 bp)
CTGTGGATTTATTCTAGTGTGTCAT
NONE
Os.52178.1.S1_at--187--7876Chr12:23806424..23806448 (25 bp)
GGTATTTCTGTCTTTTCACGTTGTA
NONE
Os.52178.1.S1_at--518--7151Chr11:22779706..22779730 (25 bp)
GTCTTTTCACGTTGTAGTCATCTCA
NONE
Os.52178.1.S1_at--112--1171Chr11:22779691..22779715 (25 bp)
AGTCATCTCATATTAGCCCTAAGGG
NONE
Os.52178.1.S1_at--277--1656Chr12:23806386..23806410 (25 bp)
AGCCCTAAGGGCCAACTCAATGAAT
NONE
Target Sequence 
TTATCACACCACATCATCTGCATTGTCAACTCCCCATCGGAGTTATCATCTCCAACTTCACCAGCTCCATATCGGAGTTG
GACATCGTTATCAGTCAAGGACCGAAGAACAATTTGTAAAGGTCCATTATCATCACCATCAACATCTCTAGATCTACAAA
GGTCTGAAGAACAGTTTGTGAAGGACCTTCATCCTCTTCATCATCATATCCACATCTCCGAATCAGTGATTGGCCGAAGA
ACGGTTCGTGAAGGCTTTAAGGTACCAAAGGAGCTGAAGAACAGTTTGTGAAGGCTCCAAGATCCTCTTCATTGAGGAAG
GGATGGATTTCCATCTTCATCATCATTCTAGAGTTGCACGATTCGACAACATCTTCAAGCATGGACTGTGGATTTATTCT
AGTGTGTCATTAATCTATATTTAGTTTCAAATGCAATGTTACATATACATTGCATTTGAGTAGGGGTGTTAAGAATATAT
ATGTATTAGTGTGTATGTGTTAAGGGGTATTTCTGTCTTTTCACGTTGTAGTCATCTCATATTAGCCCTAAGGGCCAACT
CAATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis