Browse Element(s) Details


Os.52245.1.S1_at

Description gb:AK065857.1
DB_XREF= gi:32975875
TID=Os.52245.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041P08, full insert sequence.
FL= gb:AK099129.1 gb:AK065857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0283011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02790OsAffx.30284.1.S1_at11/116+1015825..1018105hypothetical protein
LOC_Os06g02790OsAffx.10809.1.S1_at1/116+1015825..1018105hypothetical protein
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein
LOC_Os06g02840OsAffx.27430.1.S1_at11/116+1043888..1044487Harpin-induced protein 1 containing protein
LOC_Os06g02850Os.52461.1.S1_at11/116+1045030..1047727expressed protein
LOC_Os06g02850OsAffx.14477.1.S1_at1/116+1045030..1047727expressed protein
LOC_Os06g02860NANA6+1050966..1051606hypothetical protein
LOC_Os06g02870OsAffx.15237.1.S1_at11/116+1052171..1055079hypothetical protein
LOC_Os06g02880OsAffx.29663.1.S1_at8/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.380.1.S1_at4/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880Os.27345.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.13325.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.52245.1.S1_at--1143--4111Chr06:1041138..1041162 (25 bp)
CGCAGAGTTGGCCAACAAGTTGCTA
LOC_Os06g02830
Os.52245.1.S1_at--340--731Chr06:1041182..1041206 (25 bp)
ATGATTCGATGTGGACGCTTCTGGC
LOC_Os06g02830
Os.52245.1.S1_at--402--5891Chr06:1041253..1041277 (25 bp)
GAGCGTACTATCATGGCGCACAAGA
LOC_Os06g02830
Os.52245.1.S1_at--521--3271Chr06:1041375..1041399 (25 bp)
CAAAATTTCCCAAGACGACGCCAGC
LOC_Os06g02830
Os.52245.1.S1_at--258--5091Chr06:1041398..1041422 (25 bp)
GCACGTCGTCGTCCCAACAAAAATC
LOC_Os06g02830
Os.52245.1.S1_at--515--5091Chr06:1041424..1041448 (25 bp)
GCACCGGACCGGATCGATAAGCAGC
LOC_Os06g02830
Os.52245.1.S1_at--244--5591Chr06:1041451..1041475 (25 bp)
GAAATCGATATCCATCGTCACTAGC
LOC_Os06g02830
Os.52245.1.S1_at--600--51Chr06:1041509..1041533 (25 bp)
ATTGATTGCTTTTGGATGCGTGAAT
LOC_Os06g02830
Os.52245.1.S1_at--1120--2971Chr06:1041531..1041555 (25 bp)
AATGTGTGTTTGTTTGGCCTGCAGC
LOC_Os06g02830
Os.52245.1.S1_at--566--3371Chr06:1041552..1041576 (25 bp)
CAGCTTTCTCTTCTTTAATGTTATT
LOC_Os06g02830
Os.52245.1.S1_at--324--9491Chr06:1041665..1041689 (25 bp)
TCTGCTATACTACCGATCTTCATGA
LOC_Os06g02830
Target Sequence
CGCAGAGTTGGCCAACAAGTTGCTAGAAAAATACACGAATGATCATGATTCGATGTGGACGCTTCTGGCGGAGGTGTGGA
CGGAGATCATCGTGTACGTGGCTCCGTCCAACGAGGAGCGTACTATCATGGCGCACAAGAATGTGCTATGGCAGGGAGGC
GAGTTCATCACCGTGCTTTGGGCTCTCATGACTCACACCGGCATTACCCGACACCGCCGCCTCCGCGAAATCGCTCTCAA
AATTTCCCAAGACGACGCCAGCACGTCGTCGTCCCAACAAAAATCCGCACCGGACCGGATCGATAAGCAGCACGAAATCG
ATATCCATCGTCACTAGCTAATGTGTGTAAATTTGCTTGCTTGCTTGATCGATTGATTGCTTTTGGATGCGTGAATGTGT
GTTTGTTTGGCCTGCAGCTTTCTCTTCTTTAATGTTATTTTCCCCTTCTCTTTCTTTCTTTCTTTTATTCATTTGTTGTG
AAAATGTCTCTACTACTGTAAGTGCATGAGTATGTGTGGTTATAGAGTCTGCTATACTACCGATCTTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis