Browse Element(s) Details


Os.52317.1.S1_at

Description gb:AK066350.1
DB_XREF= gi:32976368
TID=Os.52317.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062E10, full insert sequence.
FL= gb:AK066350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3859011/11Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52317.1.S1_at--165--2451Chr05:22550799..22550823 (25 bp)
AAAATCGCCAGTACATCGCTGCTAT
LOC_Os05g38590
Os.52317.1.S1_at--307--7031Chr05:22550789..22550813 (25 bp)
GTACATCGCTGCTATGTTGATTTTG
LOC_Os05g38590
Os.52317.1.S1_at--1007--7951Chr05:22550742..22550766 (25 bp)
GGATCACAATGTTTAACTGCAGTAC
LOC_Os05g38590
Os.52317.1.S1_at--1137--5011Chr05:22550724..22550748 (25 bp)
GCAGTACTACTGTTGCTTACCAGTC
LOC_Os05g38590
Os.52317.1.S1_at--333--8811Chr05:22550714..22550738 (25 bp)
TGTTGCTTACCAGTCCCTAGTTTTA
LOC_Os05g38590
Os.52317.1.S1_at--649--1191Chr05:22550696..22550720 (25 bp)
AGTTTTACCGCGCTGCTTATGGTCT
LOC_Os05g38590
Os.52317.1.S1_at--172--4771Chr05:22550685..22550709 (25 bp)
GCTGCTTATGGTCTTTTTTCCAGGT
LOC_Os05g38590
Os.52317.1.S1_at--125--10371Chr05:22550671..22550695 (25 bp)
TTTTTCCAGGTGACTGCTGTTCTCC
LOC_Os05g38590
Os.52317.1.S1_at--125--4751Chr05:22550656..22550680 (25 bp)
GCTGTTCTCCTGATCAGAGACTAAT
LOC_Os05g38590
Os.52317.1.S1_at--548--4311Chr05:22550627..22550651 (25 bp)
CCTTTCTACTTATTTGCACCATGTA
LOC_Os05g38590
Os.52317.1.S1_at--863--9031Chr05:22550613..22550637 (25 bp)
TGCACCATGTAGGTACACTGCCTTT
LOC_Os05g38590
Target Sequence 
AAAATCGCCAGTACATCGCTGCTATGTTGATTTTGTTTCTTTACATGATATAATAATGGATCACAATGTTTAACTGCAGT
ACTACTGTTGCTTACCAGTCCCTAGTTTTACCGCGCTGCTTATGGTCTTTTTTCCAGGTGACTGCTGTTCTCCTGATCAG
AGACTAATTAACCCTTTCTACTTATTTGCACCATGTAGGTACACTGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis