Browse Element(s) Details


Os.52331.1.A1_at

Description gb:AK066428.1
DB_XREF= gi:32976446
TID=Os.52331.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059A18, full insert sequence.
FL= gb:AK066428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g493908/11prephenate dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52331.1.A1_at--624--4991Chr07:29579011..29579035 (25 bp)
GCATGAATTGTCAAGTACCTGTTTT
LOC_Os07g49390
Os.52331.1.A1_at--175--8991Chr07:29578378..29578402 (25 bp)
TGAATGAGCTTACGATTGGTTCTAT
LOC_Os07g49390
Os.52331.1.A1_at--474--6631Chr07:29578231..29578255 (25 bp)
GTTGTGTTAGTGACGATTTCCTTTT
LOC_Os07g49390
Os.52331.1.A1_at--282--10051Chr07:29578224..29578248 (25 bp)
TAGTGACGATTTCCTTTTGAAAGGG
LOC_Os07g49390
Os.52331.1.A1_at--205--7551Chr07:29578201..29578225 (25 bp)
GGGCCTTTATGCAATATCCCACTTA
LOC_Os07g49390
Os.52331.1.A1_at--1016--10331Chr07:29578196..29578220 (25 bp)
TTTATGCAATATCCCACTTACCCAA
LOC_Os07g49390
Os.52331.1.A1_at--470--5171Chr07:29578191..29578215 (25 bp)
GCAATATCCCACTTACCCAAAAGAA
LOC_Os07g49390
Os.52331.1.A1_at--1064--131Chr07:29578188..29578212 (25 bp)
ATATCCCACTTACCCAAAAGAACAG
LOC_Os07g49390
Os.52331.1.A1_at--938--6491Chr07:29578114..29578138 (25 bp)
GTTCGGCATTTCCTTTTTTATACTG
NONE
Os.52331.1.A1_at--57--8291NONE
GGCATTTCCTTTTTTATACTGCGAT
NONE
Os.52331.1.A1_at--290--331NONE
ATACTGCGATTTGTCTGTTGATTCA
NONE
Target Sequence 
GCATGAATTGTCAAGTACCTGTTTTGAATATACTTGGACCAGCGTTATCATGAATGAGCTTACGATTGGTTCTATNGCCA
ACTTGGAAGCACCGATAGCAGAAGTGGTACTAACTTGGAGGGTAACGATATGACATATTGATAGAGAGAATGGCACAAAG
GTGCACGATGTTTTGTTCTTGTTTTTAANTTCTCATTGTTGTGTTAGTGACGATTTCCTTTTGAAAGGGGCCTTTATGCA
ATATCCCACTTACCCAAAAGAACAGTGNTGAGATATCAAAGCTAAGGCCAAAGAATTGGTTGTTTGTCATTACAGTTCGG
CATTTCCTTTTTTATACTGCGATTTGTCTGTTGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52331.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis