Browse Element(s) Details


Os.52340.1.S1_at

Description gb:AK066530.1
DB_XREF= gi:32976548
TID=Os.52340.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072I02, full insert sequence.
FL= gb:AK066530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4642011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46370NANA3+26181248..26182120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46380NANA3+26183412..26184697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46390Os.14113.1.S1_at11/113+26188352..26194787Ras-related protein RHN1, putative, expressed
LOC_Os03g46400Os.52098.1.A1_at10/113+26191875..26193585UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase, putative, expressed
LOC_Os03g46410Os.7022.1.S1_at11/113+26194914..26198428expressed protein
LOC_Os03g46420Os.52340.1.S1_at11/113+26200692..26201799expressed protein
LOC_Os03g46424NANA3+26205738..26205986hypothetical protein
LOC_Os03g46430OsAffx.20858.5.S1_x_at11/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.1.S1_x_at5/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.4.S1_x_at3/113+26210649..26213430hypothetical protein
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46450OsAffx.30226.2.S1_s_at10/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_x_at7/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_x_at5/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.2.S1_x_at4/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.30226.1.S1_at2/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.19052.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46450OsAffx.442.1.S1_at1/113+26226216..26230184retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52340.1.S1_at--958--4291Chr03:26201232..26201256 (25 bp)
CCTCTTCTTATTTCTTCATTCTCTA
LOC_Os03g46420
Os.52340.1.S1_at--244--191Chr03:26201256..26201280 (25 bp)
ATTTCCTTCTAAAGCGACGGTCGAT
LOC_Os03g46420
Os.52340.1.S1_at--138--7431Chr03:26201366..26201390 (25 bp)
GTGTAGCGGCGAGGCCACAACGCTT
LOC_Os03g46420
Os.52340.1.S1_at--790--2591Chr03:26201384..26201408 (25 bp)
AACGCTTGGGCAACGGTGACGCGCA
LOC_Os03g46420
Os.52340.1.S1_at--1160--7731Chr03:26201424..26201448 (25 bp)
GGTAGGACGGAATCGCCGGCACCAT
LOC_Os03g46420
Os.52340.1.S1_at--529--551Chr03:26201447..26201471 (25 bp)
ATCCCCGTCGAGTTGCTGAGGTATC
LOC_Os03g46420
Os.52340.1.S1_at--391--8371Chr03:26201494..26201518 (25 bp)
GGCGAGGTCGTGCATCCCGTTCAAC
LOC_Os03g46420
Os.52340.1.S1_at--981--10231Chr03:26201563..26201587 (25 bp)
TTAGAATTTGACCACCACCGATAGG
LOC_Os03g46420
Os.52340.1.S1_at--1077--3791Chr03:26201596..26201620 (25 bp)
CTCCTCCGCCGCTTAGAAGGAAGAA
LOC_Os03g46420
Os.52340.1.S1_at--291--6591Chr03:26201658..26201682 (25 bp)
GATTGCCACATGTACCGTCTTAAGT
LOC_Os03g46420
Os.52340.1.S1_at--61--10631Chr03:26201733..26201757 (25 bp)
TTCGGGCTGTAGAATGTCTGGTTTC
LOC_Os03g46420
Target Sequence 
CCTCTTCTTATTTCTTCATTCTCTATTTCCTTCTAAAGCGACGGTCGATGGCGGTGGTCTAGGCTAAGAACGCGGTGGCG
GAACAGTTGGTAGCCTTAAGGAGTGCGGTGGATGATGGAGGAAGATGGTGGGCGGTGTAGCGGCGAGGCCACAACGCTTG
GGCAACGGTGACGCGCATGCCTGCGTCGCTCGGGTAGGACGGAATCGCCGGCACCATCCCCGTCGAGTTGCTGAGGTATC
ACAGGGTGGGGTGGTCAAACCCGGCGAGGTCGTGCATCCCGTTCAACGGCCGTTCAACGGGCAGCTCCTCACCGGCAGCG
GCGAGCAACGCTTAGAATTTGACCACCACCGATAGGTCCAGGTCCTCCTCCGCCGCTTAGAAGGAAGAAAGAGGCATGAC
ATGTGGACCTATGTTATGTTTTACTAGATTGCCACATGTACCGTCTTAAGTCAAAACCATTCAAAATAGTGTTTAGGGGG
TTATGGATCTGGTTTGAAATGTTCGGGCTGTAGAATGTCTGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis