Browse Element(s) Details


Os.52424.1.S1_x_at

Description gb:AK102500.1
DB_XREF= gi:32987709
TID=Os.52424.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095C02, full insert sequence.
FL= gb:AK102500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4672011/11IBR domain containing protein, expressed
LOC_Os02g467301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46690OsAffx.12526.1.S1_at11/112+28506520..28508121F-box domain containing protein
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52424.1.S1_x_at--736--3111Chr02:28530167..28530191 (25 bp)
AATTTTGGTGGCGACCCTGACGAAG
LOC_Os02g46720
Os.52424.1.S1_x_at--66--6351Chr02:28530191..28530215 (25 bp)
GATGCTGAACTCTTAGAACCTGAAT
LOC_Os02g46720
Os.52424.1.S1_x_at--1100--9071Chr02:28530219..28530243 (25 bp)
TGCTGTTAACTTATCCCTGTCCAAA
LOC_Os02g46720
Os.52424.1.S1_x_at--502--6351Chr02:28530697..28530721 (25 bp)
GATGCCGAGGCCATTATTGTGCGTT
LOC_Os02g46720
Os.52424.1.S1_x_at--772--7571Chr02:28530743..28530767 (25 bp)
GGGCGAGCAACACTTTGGACCTAGA
LOC_Os02g46720
Os.52424.1.S1_x_at--578--6212Chr02:28530766..28530790 (25 bp)
GAGGCTGCCAGCAACACACTGAAGA
LOC_Os02g46720
Os.52424.1.S1_x_at--589--3791Chr02:28530802..28530826 (25 bp)
CTCGTATGTTGATCGCTATGCAGAA
LOC_Os02g46720
Os.52424.1.S1_x_at--468--5271Chr02:28530824..28530848 (25 bp)
GAATGTTGTTTTGCCTATTCCAATG
LOC_Os02g46720
Os.52424.1.S1_x_at--153--2971Chr02:28530845..28530869 (25 bp)
AATGGCATACTCGTACCTCTGTTTC
LOC_Os02g46720
Os.52424.1.S1_x_at--193--1351Chr02:28530895..28530919 (25 bp)
AGAGTTTTCCTGTAGCTGTATCATT
LOC_Os02g46720
Os.52424.1.S1_x_at--893--6471Chr02:28530992..28531016 (25 bp)
GATACCATGCACCTGATTTGAACAA
LOC_Os02g46720
Target Sequence 
AATTTTGGTGGCGACCCTGACGAAGATGCTGAACTCTTAGAACCTGAATGGGTGCTGTTAACTTATCCCTGTCCAAACTG
TGGCCGTCGGAATGAAAAGCTCGGTACCAACAATCATATACTTTGCATCGGATGCCGAGGCCATTATTGTGCGTTGTGTC
GGAAAAGAGTTTTGAGGGGCGAGCAACACTTTGGACCTAGAGGCTGCCAGCAACACACTGAAGATTGATAGAGATCTCGT
ATGTTGATCGCTATGCAGAATGTTGTTTTGCCTATTCCAATGGCATACTCGTACCTCTGTTTCTGACACCCGCTTTGTAC
CCAAAATTAGAGTTTTCCTGTAGCTGTATCATTTAATTTGCATCAGGAATTTCATAACACTTACCAGTTATAGGCAGTTA
CACTGTTTATGTTTGTGGAAAAACAGATACCATGCACCTGATTTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52424.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis