Browse Element(s) Details


Os.52465.1.S1_at

Description gb:AK067303.1
DB_XREF= gi:32977321
TID=Os.52465.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102C16, full insert sequence.
FL= gb:AK067303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g362109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52465.1.S1_at--788--10771Chr07:21632338..21632362 (25 bp)
TTGTTCTGAGCTCAACTCCGGTGGA
LOC_Os07g36210
Os.52465.1.S1_at--282--2551Chr07:21632325..21632349 (25 bp)
AACTCCGGTGGACACAAGTCCTGTA
LOC_Os07g36210
Os.52465.1.S1_at--746--8651Chr07:21632264..21632288 (25 bp)
TGTGGTTTCACTGGCTTGACCATGA
LOC_Os07g36210
Os.52465.1.S1_at--428--691Chr07:21632243..21632267 (25 bp)
ATGACGCCTCTCTAGTGTGTGTGGT
LOC_Os07g36210
Os.52465.1.S1_at--653--8291Chr07:21632211..21632235 (25 bp)
GGCTTGACCATGACGGCTCAGCTTT
LOC_Os07g36210
Os.52465.1.S1_at--933--1931Chr07:21632199..21632223 (25 bp)
ACGGCTCAGCTTTTGTGCGCAAAGA
LOC_Os07g36210
Os.52465.1.S1_at--1006--8691NONE
TGTGCGCAAAGATCTGAGCGAACTC
NONE
Os.52465.1.S1_at--52--5891NONE
GAGCGAACTCGCAAAGCTGATTCTG
NONE
Os.52465.1.S1_at--69--2691Chr07:21632158..21632182 (25 bp)
AAGCTGATTCTGTAAATTTTCCGGA
LOC_Os07g36210
Os.52465.1.S1_at--493--171Chr07:21632143..21632167 (25 bp)
ATTTTCCGGATGCTTCTGATGATGT
LOC_Os07g36210
Os.52465.1.S1_at--593--8691Chr07:21632121..21632145 (25 bp)
TGTGCATATAAATCTGCTGCTGCTG
LOC_Os07g36210
Target Sequence 
TTGTTCTGAGCTCAACTCCGGTGGACACAAGTCCTGTAGCTGGTGGGGCGCTGTGTGCTCGTAGTGTGTGTGTGTGTGGT
TTCACTGGCTTGACCATGACGCCTCTCTAGTGTGTGTGGTGCTCGCTGGCTTGACCATGACGGCTCAGCTTTTGTGCGCA
AAGATCTGAGCGAACTCGCAAAGCTGATTCTGTAAATTTTCCGGATGCTTCTGATGATGTGCATATAAATCTGCTGCTGC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis