Browse Element(s) Details


Os.52520.1.S1_at

Description gb:AK067635.1
DB_XREF= gi:32977653
TID=Os.52520.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110A16, full insert sequence.
FL= gb:AK067635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0818011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52520.1.S1_at--758--4931Chr12:4177959..4177983 (25 bp)
GCTTGTGTTGCGCTCTCTCCAGATG
LOC_Os12g08180
Os.52520.1.S1_at--46--6351Chr12:4177938..4177962 (25 bp)
GATGCTCGACCAAAGATGCGCACCG
LOC_Os12g08180
Os.52520.1.S1_at--463--611Chr12:4177923..4177947 (25 bp)
ATGCGCACCGTCTTGAGGATGCTAT
LOC_Os12g08180
Os.52520.1.S1_at--747--131Chr12:4177900..4177924 (25 bp)
ATTCAACGCAAAGTGATCTGGCATG
LOC_Os12g08180
Os.52520.1.S1_at--389--7711Chr12:4177794..4177818 (25 bp)
GGGTCCTTGTATAGTACCAGCACCA
LOC_Os12g08180
Os.52520.1.S1_at--794--10051Chr12:4177783..4177807 (25 bp)
TAGTACCAGCACCATAGTTCAAGGT
LOC_Os12g08180
Os.52520.1.S1_at--834--5851Chr12:4177696..4177720 (25 bp)
GACCAATGGGTTTATCTATGCTGTA
LOC_Os12g08180
Os.52520.1.S1_at--989--10191Chr12:4177649..4177673 (25 bp)
TATTAGCATACCTTGTACACGGCAA
LOC_Os12g08180
Os.52520.1.S1_at--600--7031Chr12:4177635..4177659 (25 bp)
GTACACGGCAATTCCATATAACAAT
LOC_Os12g08180
Os.52520.1.S1_at--215--10871Chr12:4177467..4177491 (25 bp)
TTGGTTGTGTACATCCATGTGGGAT
LOC_Os12g08180
Os.52520.1.S1_at--515--771Chr12:4177444..4177468 (25 bp)
ATGTCGAGGCCGGATTGGCATCCAT
LOC_Os12g08180
Target Sequence 
GCTTGTGTTGCGCTCTCTCCAGATGCTCGACCAAAGATGCGCACCGTCTTGAGGATGCTATTCAACGCAAAGTGATCTGG
CATGATATGTTTTGGTAGCTTAGGTAGGTTCTGAATGGAGTTTGATCATTTTGCTTAGTTTGTGGATGTCAGCAATCAGT
ATACGGGGTCCTTGTATAGTACCAGCACCATAGTTCAAGGTAGAGTAGTAGATTATGATATGGCTGATCAATTTAGTATT
CAGATATCTATTTTGGAATGAATGACCAATGGGTTTATCTATGCTGTATCATCATATATTCACACATGGTTATTAGCATA
CCTTGTACACGGCAATTCCATATAACAATAGTAGTGAAATAGAGCCATAGTTAAGGTAGAACAGTAGATAGACTATGATA
TATATCCCTGAACAATTTAGAAGCCAGATATCTGTTTTGGAATGAATCAGGAATTGTGTTCTTCTATGCTATATGATCAT
ATTTGTAAATGGTTGGTTGTGTACATCCATGTGGGATGTCGAGGCCGGATTGGCATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis