Browse Element(s) Details


Os.52523.1.S1_at

Description gb:AK067643.1
DB_XREF= gi:32977661
TID=Os.52523.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111D04, full insert sequence.
FL= gb:AK067643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0934011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09280OsAffx.21870.2.S1_x_at3/112+4779347..4780268hypothetical protein
LOC_Os02g09280OsAffx.21870.3.S1_x_at1/112+4779347..4780268hypothetical protein
LOC_Os02g09290OsAffx.24172.1.S1_at11/112+4785232..4787038Cytochrome P450 71D10, putative, expressed
LOC_Os02g09300OsAffx.30486.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09300OsAffx.9762.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09310OsAffx.24172.2.S1_at11/112+4791454..4793238Cytochrome P450 family protein
LOC_Os02g09320OsAffx.24173.1.S1_at11/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09320Os.52428.1.S1_x_at1/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52523.1.S1_at--236--1071Chr02:4803788..4803812 (25 bp)
AGGGTTCCTGAAAGATCCTAGTGAC
LOC_Os02g09340
Os.52523.1.S1_at--847--1371Chr02:4803757..4803781 (25 bp)
AGACCTTCTGATTTTTCCGTTCATA
LOC_Os02g09340
Os.52523.1.S1_at--533--1051Chr02:4803699..4803723 (25 bp)
AGGTGGAGGCACTTGCTGCTACTAC
LOC_Os02g09340
Os.52523.1.S1_at--214--2871Chr02:4803632..4803656 (25 bp)
AAGTGGCAAAACTGATTCTGGCATC
LOC_Os02g09340
Os.52523.1.S1_at--248--4971Chr02:4803612..4803636 (25 bp)
GCATCAATCTGGTTGCATCGCCAAG
LOC_Os02g09340
Os.52523.1.S1_at--1069--7571Chr02:4803505..4803529 (25 bp)
GGGCTCTTTTCGTTGACAGAACAGC
LOC_Os02g09340
Os.52523.1.S1_at--1034--1571Chr02:4803483..4803507 (25 bp)
AGCTCATTACCGAGGCTGGAATAGA
LOC_Os02g09340
Os.52523.1.S1_at--39--6291Chr02:4803460..4803484 (25 bp)
GATGTTGCTCACCAAGCATAGCTTC
LOC_Os02g09340
Os.52523.1.S1_at--1051--4951Chr02:4803445..4803469 (25 bp)
GCATAGCTTCAGAACCCAGAAATGT
LOC_Os02g09340
Os.52523.1.S1_at--623--191Chr02:4803350..4803374 (25 bp)
ATTTCTTTTGCTTTGGGTCTCATCG
LOC_Os02g09340
Os.52523.1.S1_at--999--531Chr02:4803329..4803353 (25 bp)
ATCGCCCTGTTTGCTGTTGGATTGC
LOC_Os02g09340
Target Sequence 
AGGGTTCCTGAAAGATCCTAGTGACATCAAGAGACCTTCTGATTTTTCCGTTCATATGGGGCTCCAAAATCTTCAAACTG
AAGCTGCGGAGGTGGAGGCACTTGCTGCTACTACTACATTGAAGAAACTTGCAGATATGGCTAAGGGATTCCTGAGAAGT
GGCAAAACTGATTCTGGCATCAATCTGGTTGCATCGCCAAGTGTAAACAGTACTAGAATTGTTTCCAAGACCAAACCAAA
CAAGGAAATGGATATGATTCTTGATGCTGAAAAGGAAATTGCCGGGCTCTTTTCGTTGACAGAACAGCTCATTACCGAGG
CTGGAATAGATGTTGCTCACCAAGCATAGCTTCAGAACCCAGAAATGTATATCATATTGCAGTTTTGCAACATTTAGATA
GTTGCTGTGAAGATTCAGCTGAAATTGTTAGCGTTTTCATTTCTTTTGCTTTGGGTCTCATCGCCCTGTTTGCTGTTGGA
TTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis