Browse Element(s) Details


Os.52536.1.S1_at

Description gb:AK067801.1
DB_XREF= gi:32977819
TID=Os.52536.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118I15, full insert sequence.
FL= gb:AK067801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4380011/11Phenylalanine ammonia-lyase, putative, expressed
LOC_Os12g276405/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g352901/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43750Os.23443.1.S1_at10/114+25679149..25683278Adenosine kinase 2, putative, expressed
LOC_Os04g43760Os.37893.1.S1_at11/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760OsAffx.27816.1.S1_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760Os.9330.1.S1_x_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43770Os.24233.2.S1_at1/114+25693037..25696005expressed protein
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43790NANA4+25704870..25706367hypothetical protein
LOC_Os04g43800Os.52536.1.S1_at11/114+25707996..25710635Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43810OsAffx.26617.4.S1_x_at8/114+25719081..25722589hypothetical protein
LOC_Os04g43820Os.51568.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43820OsAffx.4078.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43829NANA4+25730563..25730910NA

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52536.1.S1_at--524--5432Chr05:20870511..20870531 (21 bp)
GAACCAGGGCAAGCACATCGACGCA
LOC_Os05g35290
Os.52536.1.S1_at--903--1492Chr12:16272110..16272134 (25 bp)
AGCACATCGACGCACTGCTCGAGTG
LOC_Os12g27640
Os.52536.1.S1_at--307--9172Chr12:16272059..16272083 (25 bp)
TGCCCATCTGCTGATTGCTGAACAG
LOC_Os12g27640
Os.52536.1.S1_at--321--72Chr12:16272046..16272070 (25 bp)
ATTGCTGAACAGAGGACCGACGAGA
LOC_Os12g27640
Os.52536.1.S1_at--211--10511Chr04:25708190..25708214 (25 bp)
TTCACAGATGTGCTTAGCTGATGCT
LOC_Os04g43800
Os.52536.1.S1_at--407--4752Chr12:16271970..16271994 (25 bp)
GCTGATGCTGTAATAAGTATGCCTT
LOC_Os12g27640
Os.52536.1.S1_at--273--9791Chr04:25708161..25708185 (25 bp)
TAAGTATGCCTTTTCTTTCATTTTT
LOC_Os04g43800
Os.52536.1.S1_at--987--6732Chr12:16271928..16271955 (25 bp)
GTTCTTGTTTGCAACGTTCTTTGGA
LOC_Os12g27640
Os.52536.1.S1_at--877--8191Chr04:25708108..25708132 (25 bp)
GGAAGTTACGATGCCATAGCCAAAT
LOC_Os04g43800
Os.52536.1.S1_at--466--10251Chr04:25708076..25708100 (25 bp)
TTTGCATAGAGGCAGGCAGCTACTA
LOC_Os04g43800
Os.52536.1.S1_at--1033--6451Chr04:25708014..25708038 (25 bp)
GATACTTTTCCATGGTCAATTCGTG
LOC_Os04g43800
Target Sequence 
GAACCAGGGCAAGCACATCGACGCACTGCTCGAGTGCCTCAAGGAGTGGAACGGCGAGCCTCTGCCCATCTGCTGATTGC
TGAACAGAGGACCGACGAGAAGATAGCAAAATATTAGCGTGTTTCAGAAATTCAGAAGTTCACAGATGTGCTTAGCTGAT
GCTGTAATAAGTATGCCTTTTCTTTCATTTTTTTTTAAGTTCTTGTTTGCAACGTTCTTTGGAAGTTACGATGCCATAGC
CAAATTTAGCAATTTGCATAGAGGCAGGCAGCTACTAAAACTGCTGTTGATGTAAGTTAAAGGGTGTAATTTGTGATACT
TTTCCATGGTCAATTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis