Browse Element(s) Details


Os.52622.1.S1_at

Description gb:AK068356.1
DB_XREF= gi:32978374
TID=Os.52622.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146D06, full insert sequence.
FL= gb:AK068356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4420011/11DNA-binding storekeeper protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52622.1.S1_at--219--6671Chr07:26412217..26412241 (25 bp)
GTTGCTTGACGCCTCTGTTTAAGGA
LOC_Os07g44200
Os.52622.1.S1_at--515--5231Chr07:26412267..26412291 (25 bp)
GAATCAAACCCGTTCGGTGCACAAC
LOC_Os07g44200
Os.52622.1.S1_at--355--2051Chr07:26412367..26412391 (25 bp)
ACTTGAAACGGATCGAGCTGCTGCA
LOC_Os07g44200
Os.52622.1.S1_at--783--951Chr07:26412391..26412415 (25 bp)
AGGACCAGGTGAAGGCTACGCTTGA
LOC_Os07g44200
Os.52622.1.S1_at--672--4471Chr07:26412434..26412458 (25 bp)
GCCTGGGACTTGAATGACCGAGCGT
LOC_Os07g44200
Os.52622.1.S1_at--721--2951Chr07:26412460..26412484 (25 bp)
AAGGCCTGTCTTGATGCTCATTTAG
LOC_Os07g44200
Os.52622.1.S1_at--616--7731Chr07:26412519..26412543 (25 bp)
GGTGTTTTTGCAGATTTTCGTCCAT
LOC_Os07g44200
Os.52622.1.S1_at--588--1951Chr07:26412552..26412576 (25 bp)
ACTGTTGACTTGTTTGGGCTTGGAA
LOC_Os07g44200
Os.52622.1.S1_at--1131--10411Chr07:26412611..26412635 (25 bp)
TTATTTAGCTTTCACTTCTTGCCTC
LOC_Os07g44200
Os.52622.1.S1_at--1110--10551Chr07:26412626..26412650 (25 bp)
TTCTTGCCTCCTTTCCTATAAGATA
LOC_Os07g44200
Os.52622.1.S1_at--985--7571Chr07:26412682..26412706 (25 bp)
GGGCGGCCAGTAAGGCATCCTGATA
LOC_Os07g44200
Target Sequence 
GTTGCTTGACGCCTCTGTTTAAGGAGATGGTACGTGCAGTGATAAATATCGAATCAAACCCGTTCGGTGCACAACTGTCC
GAGCCGCCACATGGTTTGCCCATGGAAGGGGAGAAATGGAGGAAGCAGCGTATATTGGAGCTGGAGGTATACTTGAAACG
GATCGAGCTGCTGCAGGACCAGGTGAAGGCTACGCTTGAGGAGCTCAAGTCCTCCGCGCCTGGGACTTGAATGACCGAGC
GTGAAGGCCTGTCTTGATGCTCATTTAGGATTCTTGGTATGATTCGTAGTGGTAGATGTTTAGGTGTTTTTGCAGATTTT
CGTCCATAAAAGAATACTGTTGACTTGTTTGGGCTTGGAACTAGCTTATTTTATGTTTCTAATTGTTTACATGATTATTT
AGCTTTCACTTCTTGCCTCCTTTCCTATAAGATAGGTATATGGTTGTCTCTAAGTGGTATATTTGGGGCGGCCAGTAAGG
CATCCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis