Browse Element(s) Details


Os.52652.1.S1_at

Description gb:AK068552.1
DB_XREF= gi:32978569
TID=Os.52652.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156I11, full insert sequence.
FL= gb:AK068552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4248011/11Nodulation receptor kinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52652.1.S1_at--637--8311Chr04:24925547..24925571 (25 bp)
GGCTCTGTAAACCATCTGATCCTAG
LOC_Os04g42480
Os.52652.1.S1_at--710--3711Chr04:24925568..24925592 (25 bp)
CTAGCTTCTGCTTTTACTCGAGAGA
LOC_Os04g42480
Os.52652.1.S1_at--60--7771Chr04:24925599..24925623 (25 bp)
GGTGAACTCACCAGTGTCCAGCAAA
LOC_Os04g42480
Os.52652.1.S1_at--137--2811Chr04:24925637..24925661 (25 bp)
AAGTTCAGTTTTGCGAATCGGGACA
LOC_Os04g42480
Os.52652.1.S1_at--1095--5651Chr04:24925745..24925769 (25 bp)
GACATGTGAATCGAAGTTTTCCCCA
LOC_Os04g42480
Os.52652.1.S1_at--853--6791Chr04:24925760..24925784 (25 bp)
GTTTTCCCCATATAGCCTTTTTGCT
LOC_Os04g42480
Os.52652.1.S1_at--1107--5411Chr04:24925839..24925863 (25 bp)
GAAGCCTTTCAACACTCAACAGTTC
LOC_Os04g42480
Os.52652.1.S1_at--1125--8832Chr04:24925865..24925889 (25 bp)
TGATACAGCTTTCCGTTCTTGTGTA
LOC_Os04g42480
Os.52652.1.S1_at--810--3611Chr04:24925882..24925906 (25 bp)
CTTGTGTATATTTTGCTGGTCCTCC
LOC_Os04g42480
Os.52652.1.S1_at--64--8611Chr04:24925898..24925922 (25 bp)
TGGTCCTCCTAGTGGTACAGCTGAT
LOC_Os04g42480
Os.52652.1.S1_at--197--7511Chr04:24925909..24925933 (25 bp)
GTGGTACAGCTGATCTTTTTGTCAT
LOC_Os04g42480
Target Sequence 
GGCTCTGTAAACCATCTGATCCTAGCTTCTGCTTTTACTCGAGAGAGCATTTGGTGAACTCACCAGTGTCCAGCAAAGAT
CCACAAAAACAAGTTCAGTTTTGCGAATCGGGACAACTNAAATCTATACATGGTTGCAGGATTATTATATGCGCTGTACA
TGGACTNGCATGTTTAAAAGATCAATATGATGTACACCGACATGTGAATCGAAGTTTTCCCCATATAGCCTTTTTGCTCT
ATCCAAGCTTTCAGTAATTTGTGTCTCAAGGAAGTGTGAATGGTCTTGTTTTGAAGCCTTTCAACACTCAACAGTTCTTG
ATACAGCTTTCCGTTCTTGTGTATATTTTGCTGGTCCTCCTAGTGGTACAGCTGATCTTTTTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis