Browse Element(s) Details


Os.52687.1.A1_at

Description gb:AK068758.1
DB_XREF= gi:32978783
TID=Os.52687.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159P21, full insert sequence.
FL= gb:AK068758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g287401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28690OsAffx.27854.2.S1_at10/116+16338517..16339770hypothetical protein
LOC_Os06g28700NANA6+16341336..16341614hypothetical protein
LOC_Os06g28710OsAffx.26327.1.S1_at11/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710Os.15412.1.S1_x_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710OsAffx.26327.1.S1_s_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28720OsAffx.4956.1.S1_at11/116+16351390..16352259expressed protein
LOC_Os06g28730Os.40388.2.S1_s_at11/116+16352729..16353523hypothetical protein
LOC_Os06g28740Os.21650.1.S1_at9/116+16362087..16365456expressed protein
LOC_Os06g28740Os.55477.1.S1_at3/116+16362087..16365456expressed protein
LOC_Os06g28740Os.52687.1.A1_at1/116+16362087..16365456expressed protein
LOC_Os06g28750OsAffx.32334.1.S1_s_at7/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28750OsAffx.32334.1.S1_x_at4/116+16370400..16377341retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28760OsAffx.15650.1.S1_at11/116+16380272..16381992hypothetical protein
LOC_Os06g28770OsAffx.27856.1.S1_at11/116+16384567..16386436hypothetical protein
LOC_Os06g28780NANA6+16389087..16391530retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52687.1.A1_at--425--1571Chr01:38116469..38116493 (25 bp)
AGCTCAAAATCCATGGCGACGAACA
NONE
Os.52687.1.A1_at--336--2232Chr06:16364592..16364711 (25 bp)
ACAATGTCTGTGAGATCTAGGGCCA
LOC_Os06g28740
Os.52687.1.A1_at--155--3711Chr01:38116426..38116450 (25 bp)
CTAGGGCCACAGTGATGCGGTGAAT
NONE
Os.52687.1.A1_at--274--7351Chr01:38116407..38116431 (25 bp)
GTGAATCGCCGTGGCCACAGACGAT
NONE
Os.52687.1.A1_at--45--4011Chr01:38116321..38116345 (25 bp)
CGTGCCCTGCATGCCAGAATTGGAA
NONE
Os.52687.1.A1_at--47--10731Chr01:38116214..38116238 (25 bp)
TTGCTCTGCCACTAGGCAATGCGGC
NONE
Os.52687.1.A1_at--477--3011Chr01:38116197..38116221 (25 bp)
AATGCGGCCGCTACAGCAATTTGCA
NONE
Os.52687.1.A1_at--730--7011Chr01:38116156..38116180 (25 bp)
GTACTACTACCTGCCTAGAGGTAAA
NONE
Os.52687.1.A1_at--5--6831Chr01:38116110..38116134 (25 bp)
GTTTATTTCTGTATGCTTGCAAGCT
NONE
Os.52687.1.A1_at--1038--5191Chr01:38116085..38116109 (25 bp)
GCAATTGTTTTTTGGCACCCAGTTG
NONE
Os.52687.1.A1_at--954--1811Chr01:38116069..38116093 (25 bp)
ACCCAGTTGCGTGGTTTGTTGAGCA
NONE
Target Sequence 
AGCTCAAAATCCATGGCGACGAACAGAACAATGTCTGTGAGATCTAGGGCCACAGTGATGCGGTGAATCGCCGTGGCCAC
AGACGATCCAGGGCGCGTGGCGGCGGCGCGGCGGCGCGCGCGGGCATGCCGCGAGTGCGTGGTCGGCGCGTGCCCTGCAT
GCCAGAATTGGAAGGTGGCGTCGTCCGCGCACGGGGCTCGCTGCCACCTCGGACACCTCCTACCTCTCTCACGCAACACC
ACAAAAACACCACGCTTGCTCTGCCACTAGGCAATGCGGCCGCTACAGCAATTTGCAGCATCTCTCTCCCATCGTACTAC
TACCTGCCTAGAGGTAAAATAACGAGCAACAGTTTGTTTGTTTATTTCTGTATGCTTGCAAGCTGCAATTGTTTTTTGGC
ACCCAGTTGCGTGGTTTGTTGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52687.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis