Browse Element(s) Details


Os.52882.2.S1_at

Description gb:AK070100.1
DB_XREF= gi:32980124
TID=Os.52882.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041F15, full insert sequence.
FL= gb:AK070100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g471601/11Bromodomain associated family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52882.2.S1_at--1158--5851Chr02:28788838..28788862 (25 bp)
GAGCCCGAACCAAAGGCGGCGTACG
LOC_Os02g47160
Os.52882.2.S1_at--251--3631Chr02:28789065..28789089 (25 bp)
CTTCGAACGGTTCGCGGAGAATCGA
NONE
Os.52882.2.S1_at--837--5251Chr02:28789083..28789107 (25 bp)
GAATCGAGAAAAATCCGCGGCAATA
NONE
Os.52882.2.S1_at--1109--5671Chr02:28789215..28789239 (25 bp)
GACTTGACGAGTTTTGGGCTCTGCC
NONE
Os.52882.2.S1_at--584--1211Chr02:28789224..28789248 (25 bp)
AGTTTTGGGCTCTGCCTGGGCCACA
NONE
Os.52882.2.S1_at--970--2171Chr02:28789246..28789270 (25 bp)
ACACGTGGCGCCTATAGGCTACTAG
NONE
Os.52882.2.S1_at--105--4251Chr02:28789286..28789310 (25 bp)
CCGTCGTGGCTGAACTGGCCGAAAA
NONE
Os.52882.2.S1_at--510--2531Chr02:28789298..28789322 (25 bp)
AACTGGCCGAAAAGGTCAAGTGTGT
NONE
Os.52882.2.S1_at--1004--6631NONE
GTTGTAATTGAGTTGCCACAGTTTA
NONE
Os.52882.2.S1_at--77--6071Chr02:28789346..28789370 (25 bp)
GAGTTGCCACAGTTTATCACAAATT
NONE
Os.52882.2.S1_at--396--10231Chr02:28789370..28789393 (24 bp)
TTTGGCTTTAGTTTGTTCACGCGGC
NONE
Target Sequence 
GAGCCCGAACCAAAGGCGGCGTACGACGAGGCGACGGCGAGGTGGGAGGCGCGCGTTCGCCACGAGGAGGAGGCGAATGC
AGAAGAAGCGGTGGTATTGAAGCCGAGCGTTGATGGCGGCGGGGAGCGCAGGGGAGTAGTACCGGAGAAGAGGGGGAAAG
TGAGCTTCCGCGTGCGGGCGGAGAGGAAGAAGCGGCGGGTGGGATTGGACCAGCAGTGAGGCGGTGGCTTCGAACGGTTC
GCGGAGAATCGAGAAAAATCCGCGGCAATAGTGCGGGCGGCGAGCAACTACCGCTCGGCCGTGGCCGTGGAGAATGGAGA
TGGACGACACGCCGCGGCGTTGCCCGGTGACCCCTGTCCAGTCGAGGGGTTGAAGAAGACTTGACGAGTTTTGGGCTCTG
CCTGGGCCACACGTGGCGCCTATAGGCTACTAGCCCACGAGCCACCTGCCGTCGTGGCTGAACTGGCCGAAAAGGTCAAG
TGTGTGGGTGATTGTACAAGTTGTAATTGAGTTGCCACAGTTTATCACAAATTTTGGCTTTAGTTTGTTCACGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52882.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis