Browse Element(s) Details


Os.52931.1.S1_at

Description gb:AK069976.1
DB_XREF= gi:32980000
TID=Os.52931.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035N02, full insert sequence.
FL= gb:AK069976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3804011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed
LOC_Os02g38050Os.10962.2.S1_x_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38050Os.10962.1.S1_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38060OsAffx.2904.1.S1_at11/112+22984837..22989130Cerebral protein 1, putative
LOC_Os02g38069NANA2+22990739..22991060NA
LOC_Os02g38080Os.18535.1.S1_at11/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38080OsAffx.2562.1.S1_at1/112+22994204..22999452Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52931.1.S1_at--381--1271Chr02:22975020..22975044 (25 bp)
AGATACACGCGCTCCCGGACTGCTT
LOC_Os02g38040
Os.52931.1.S1_at--973--4451Chr02:22975337..22975361 (25 bp)
GCCTACCTCCAGCAGAATCTGTGAT
LOC_Os02g38040
Os.52931.1.S1_at--39--8691Chr02:22975356..22975380 (25 bp)
TGTGATCGGAGATTACAGCATTTGC
LOC_Os02g38040
Os.52931.1.S1_at--131--7331Chr02:22975389..22975413 (25 bp)
GTGCTTTCATCCGTATGTACAGAAG
LOC_Os02g38040
Os.52931.1.S1_at--179--1451Chr02:22975409..22975433 (25 bp)
AGAAGAACTACTGCAGACCGTCGCC
LOC_Os02g38040
Os.52931.1.S1_at--833--9391Chr02:22975437..22975461 (25 bp)
TCGTTCGTTTCGCATCAGCCGTGTG
LOC_Os02g38040
Os.52931.1.S1_at--141--4131Chr02:22975447..22975471 (25 bp)
CGCATCAGCCGTGTGTTTGTGTGTG
LOC_Os02g38040
Os.52931.1.S1_at--464--8671Chr02:22975464..22975488 (25 bp)
TGTGTGTGTTTACCTTCGCTGATTC
LOC_Os02g38040
Os.52931.1.S1_at--1161--9311Chr02:22975479..22975503 (25 bp)
TCGCTGATTCCTTACCATTTACCAT
LOC_Os02g38040
Os.52931.1.S1_at--688--9831Chr02:22975546..22975570 (25 bp)
TAAACCCAGGTTACTGGACCACAGT
LOC_Os02g38040
Os.52931.1.S1_at--619--1951Chr02:22975558..22975582 (25 bp)
ACTGGACCACAGTGCCTGTGTGTTT
LOC_Os02g38040
Target Sequence 
AGATACACGCGCTCCCGGACTGCTTCGGCCGCCTCCAGCGCCTCGAGCGGCTCCGCCTCGACCAGAACCCGCTCGCCGTG
CCCCCCAAGGAGGTGGTGGCCGGCGGCGTCGGCGCCGTCAAGGAGTACATGGCCAGGCGGTGGCGCGACGCCCGCGCCGA
GGAGGAGCGCCGGGGCAGCGCCGTCGCCGAGAGCCCCAGGGTGTCGACGCCCAAGGAGTGGCTGGTGCGCAGCGTCTCGT
CGCTGGGCAGCTGGGTGTCCGACGTCACGAGGTACGGCGCCGGCCAGGACAAGGCAGCGGCGGAGGAGGAGGAGGACGCC
TACCTCCAGCAGAATCTGTGATCGGAGATTACAGCATTTGCTTGCTCCGGTGCTTTCATCCGTATGTACAGAAGAACTAC
TGCAGACCGTCGCCGCGTCGTTCGTTTCGCATCAGCCGTGTGTTTGTGTGTGTTTACCTTCGCTGATTCCTTACCATTTA
CCATTTTTGTTGTTGTTGTTTTAACCGTTTTGCTGTTTAAAACTTTTAAACCCAGGTTACTGGACCACAGTGCCTGTGTG
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis