Browse Element(s) Details


Os.52944.1.A1_at

Description gb:AK070038.1
DB_XREF= gi:32980062
TID=Os.52944.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035D03, full insert sequence.
FL= gb:AK070038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0931011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g186701/11C4-dicarboxylate transporter/malic acid transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52944.1.A1_at--494--1531Chr06:4678768..4678792 (25 bp)
AGCAGGCCGTGGTCGGACCGTCCTT
LOC_Os06g09310
Os.52944.1.A1_at--412--8391Chr06:4678868..4678892 (25 bp)
GGCGAACTGATCCTTCTCCCCGGAG
LOC_Os06g09310
Os.52944.1.A1_at--798--4191Chr06:4678886..4678910 (25 bp)
CCCGGAGCTCCGAGATGCATTGGCT
LOC_Os06g09310
Os.52944.1.A1_at--856--1291Chr06:4678898..4678922 (25 bp)
AGATGCATTGGCTCGCCTCGCCGAT
LOC_Os06g09310
Os.52944.1.A1_at--315--6451Chr06:4678920..4678944 (25 bp)
GATCACCGGAGCGTACACATGTGTT
LOC_Os06g09310
Os.52944.1.A1_at--1045--8071Chr06:4678927..4678951 (25 bp)
GGAGCGTACACATGTGTTCATTCTT
LOC_Os06g09310
Os.52944.1.A1_at--12--6751Chr06:4678942..4678966 (25 bp)
GTTCATTCTTTCTTTCCTACTATTC
LOC_Os06g09310
Os.52944.1.A1_at--493--3592Chr06:4678945..4678969 (25 bp)
CATTCTTTCTTTCCTACTATTCTTT
LOC_Os06g09310
Os.52944.1.A1_at--800--10671Chr06:4678955..4678979 (25 bp)
TTCCTACTATTCTTTTCTGATATTT
LOC_Os06g09310
Os.52944.1.A1_at--732--5351Chr06:4679043..4679067 (25 bp)
GAAGATGACAACATTACTGTAAGTT
LOC_Os06g09310
Os.52944.1.A1_at--167--1972Chr06:4679058..4679082 (25 bp)
ACTGTAAGTTGATTCTTGGTGATTG
LOC_Os06g09310
Target Sequence 
AGCAGGCCGTGGTCGGACCGTCCTTCAGCCCGCGCGGCGGCGGCGACATCGAGCAGGGGCTCGCCGGCGCTCCGCCGAAG
ACGCCCAAGACGCCGCCGCCGGCGAACTGATCCTTCTCCCCGGAGCTCCGAGATGCATTGGCTCGCCTCGCCGATCACCG
GAGCGTACACATGTGTTCATTCTTTCTTTCCTACTATTCTTTTCTGATATTTTCTTTTACATTTCAAAAAAGAAAAAAAA
AGAAGAAATTTTGATNAGAAACTCTCATGTAAAAAGAAGATGACAACATTACTGTAAGTTGATTCTTGGTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52944.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis