Browse Element(s) Details


Os.52979.1.S1_at

Description gb:AK070239.1
DB_XREF= gi:32980263
TID=Os.52979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045K14, full insert sequence.
FL= gb:AK070239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g346505/11retrotransposon protein, putative, unclassified
LOC_Os04g215105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g432105/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g185904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g491002/11retrotransposon protein, putative, unclassified
LOC_Os03g304401/11hypothetical protein
LOC_Os03g162501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52979.1.S1_at--263--57156Chr12:1380104..1380539 (25 bp)
GACTAATGTTCTCCTTTGAGGTGTG
NONE
Os.52979.1.S1_at--466--100713Chr12:1380137..1380161 (25 bp)
TAGGTCCCACTATGATGAGGCTAAT
NONE
Os.52979.1.S1_at--821--8311Chr02:20607677..20607701 (25 bp)
GGCTAATGAATGACACCACGGGTTA
NONE
Os.52979.1.S1_at--56--10451Chr02:20607655..20607679 (25 bp)
TTAGTGGTCGCCAAGCCAAGGACAT
NONE
Os.52979.1.S1_at--919--29124Chr12:4783111..4783135 (25 bp)
AAGGATGGACAAGACCTCGGCATAA
NONE
Os.52979.1.S1_at--156--8333Chr12:4783138..4783162 (25 bp)
ATGGTTCAACCGGATGGTCACAAGT
NONE
Os.52979.1.S1_at--459--78330Chr11:1516302..1516326 (25 bp)
GGTCACAAGTGTTGATCTCGGCTCA
NONE
Os.52979.1.S1_at--892--83130Chr11:1516321..1516345 (25 bp)
GGCTCAAGCTTGACCCCAAGATGGA
NONE
Os.52979.1.S1_at--312--8172Chr10:998606..998630 (25 bp)
GGAACATGCTCCATTTCATGGTTTT
NONE
Os.52979.1.S1_at--68--10292Chr11:9039804..9039828 (25 bp)
TTTCCCCTTTCGATTGTACACTCAT
NONE
Os.52979.1.S1_at--963--1231Chr02:20601860..20601884 (25 bp)
AGTTGCAGCTATGCCTTCAATGGAT
NONE
Target Sequence 
GACTAATGTTCTCCTTTGAGGTGTGAAAAGGAATAGGTCCCACTATGATGAGGCTAATGAATGACACCACGGGTTAGTGG
TCGCCAAGCCAAGGACATCGTCATGTTGGCAAGAATGAAGTCAAGCTTGTGATGAGAATAAAGTCTTGACAAAGGATGGA
CAAGACCTCGGCATAAACATGGTTCAACCGGATGGTCACAAGTGTTGATCTCGGCTCAAGCTTGACCCCAAGATGGATGG
CGCAAGGCAAAGATTGGAACAAGCTAATCTTCTGCTCAAGAAAACACCATTGTTGGAGATGATGACAATTGTCCTCCACT
GCTCCTGACCATTCAAACAGGTTGACAGGAACATGCTCCATTTCATGGTTTTGCTAAATGAAGTGCGGTTGTCATGAGAA
ATCAGTGCAGAATGGCAAGGTAGATGCAATTATTCGATCAGTGCAGAGAAAATGGAGGCAATGCTAGGGCATAATTTCTT
CTAACTGTTTTTCCATTCTTTCCCCTTTCGATTGTACACTCATGGTTGACACATATATGTACAGTTCAGATTTATAAGTT
GCAGCTATGCCTTCAATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis