Browse Element(s) Details


Os.5298.1.S1_a_at

Description gb:AK109388.2
DB_XREF= gi:42821703
TID=Os.5298.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5298 (NCBI UniGene Cluster)
UG_TITLE=Clone Osh67 unknown protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E04, full insert sequence.
FL= gb:AK109388.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6436011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed
LOC_Os03g64370NANA3+36323925..36325847pentatricopeptide, putative
LOC_Os03g64380Os.49921.1.S1_at9/113+36326846..36328475expressed protein
LOC_Os03g64390NANA3+36329138..36330337hypothetical protein
LOC_Os03g64400Os.16535.1.S1_at10/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.24152.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.20956.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.988.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.23696.1.S1_x_at1/113+36333707..36340637expressed protein
LOC_Os03g64415Os.14671.1.S1_at6/113+36341423..36344422Kinesin-1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5298.1.S1_a_at--894--4351Chr03:36322932..36322956 (25 bp)
CCACTGCCGCGGGAACTAGGAGTAG
LOC_Os03g64360
Os.5298.1.S1_a_at--502--5431Chr03:36322967..36322991 (25 bp)
GAACGGTGTGGTCCTCAAGTACTAT
LOC_Os03g64360
Os.5298.1.S1_a_at--609--1271Chr03:36322994..36323018 (25 bp)
AGATACTCGCAGATCTGGCGTGTGC
LOC_Os03g64360
Os.5298.1.S1_a_at--91--8491Chr03:36323009..36323033 (25 bp)
TGGCGTGTGCCATGGTGAGTCATCA
LOC_Os03g64360
Os.5298.1.S1_a_at--743--911Chr03:36323052..36323076 (25 bp)
AGCCCCTCTAAGTGGCGCAACTTTA
LOC_Os03g64360
Os.5298.1.S1_a_at--941--1471Chr03:36323082..36323106 (25 bp)
AGAATCTTGCACTCAAGCTCAGCTC
LOC_Os03g64360
Os.5298.1.S1_a_at--656--5491Chr03:36323135..36323159 (25 bp)
GAACAGGCTGTTTGGCGCGCATGAT
LOC_Os03g64360
Os.5298.1.S1_a_at--677--8151Chr03:36323202..36323226 (25 bp)
GGAAATTCATTTTGTCCCATGTGAT
LOC_Os03g64360
Os.5298.1.S1_a_at--893--651Chr03:36323280..36323304 (25 bp)
ATGCACTGGTGCCTTGTATGTAAGA
LOC_Os03g64360
Os.5298.1.S1_a_at--770--6111Chr03:36323313..36323337 (25 bp)
GAGTGCATCCTTGTTGAATGCTACT
LOC_Os03g64360
Os.5298.1.S1_a_at--233--8071Chr03:36323388..36323412 (25 bp)
GGAGAAGATGCTGCTACTCTACTGC
LOC_Os03g64360
Target Sequence 
CCACTGCCGCGGGAACTAGGAGTAGATCCTTACAAGAACGGTGTGGTCCTCAAGTACTATCCAGATACTCGCAGATCTGG
CGTGTGCCATGGTGAGTCATCAGGGGATGATGGTCGCAACAGCCCCTCTAAGTGGCGCAACTTTACCACAAGAATCTTGC
ACTCAAGCTCAGCTCGACGATTAGGATGGAACCAGGCCATCTTGAACAGGCTGTTTGGCGCGCATGATGCATCTGAGGAA
GAGGAGGAAGAGACTTAAGAGGATATATATGGAAATTCATTTTGTCCCATGTGATGTATGCTCACTGTGTTTTTAAGANC
CTTTTCTCCTTTTTTTAACAAGATGAGAATGCACTGGTGCCTTGTATGTAAGAGATGCTGTGAGTGCATCCTTGTTGAAT
GCTACTATAATACATGCTGTATACATGAACAAGGATTAATGAGCGGAGCATAGAATGGAGAAGATGCTGCTACTCTACTG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5298.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis