Browse Element(s) Details


Os.53097.1.S1_at

Description gb:AK070801.1
DB_XREF= gi:32980824
TID=Os.53097.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072A11, full insert sequence.
FL= gb:AK070801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5082011/11Oligopeptide transporter 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein
LOC_Os04g50810OsAffx.14359.1.S1_at11/114+29838814..29840476hypothetical protein
LOC_Os04g50820Os.53097.1.S1_at11/114+29843343..29846484Oligopeptide transporter 4, putative, expressed
LOC_Os04g50830NANA4+29847209..29850778retrotransposon protein, putative, LINE subclass
LOC_Os04g50840OsAffx.25106.1.S1_x_at10/114+29851413..29853853hypothetical protein
LOC_Os04g50850Os.54852.1.S1_at11/114+29856333..29857941Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g50860Os.21073.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50860Os.52685.1.S1_at11/114+29858539..29861314expressed protein
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53097.1.S1_at--712--8391Chr04:29845935..29845959 (25 bp)
GGCGCCGTGTTCAACTACCTGGTGT
LOC_Os04g50820
Os.53097.1.S1_at--117--3551Chr04:29846030..29846054 (25 bp)
CATCATGGGCGTGCTCATCTACTTC
LOC_Os04g50820
Os.53097.1.S1_at--895--6131Chr04:29846160..29846184 (25 bp)
GAGGGATGTCCCGTCTTCTGATCGA
LOC_Os04g50820
Os.53097.1.S1_at--832--3631Chr04:29846174..29846198 (25 bp)
CTTCTGATCGATCATCCATCCAATA
LOC_Os04g50820
Os.53097.1.S1_at--1086--4191Chr04:29846210..29846234 (25 bp)
CCCGTAGATGTGTTCTTCGTGCGAA
LOC_Os04g50820
Os.53097.1.S1_at--675--10551Chr04:29846222..29846246 (25 bp)
TTCTTCGTGCGAAACTAGATCAGTA
LOC_Os04g50820
Os.53097.1.S1_at--559--5231Chr04:29846257..29846281 (25 bp)
GAATCTGAATCTCTACTCGTTTAAT
LOC_Os04g50820
Os.53097.1.S1_at--227--9911Chr04:29846270..29846294 (25 bp)
TACTCGTTTAATATGGCAGGACTGA
LOC_Os04g50820
Os.53097.1.S1_at--498--10351Chr04:29846333..29846357 (25 bp)
TTTAGGTTTCCAAATGCTCTTCTTT
LOC_Os04g50820
Os.53097.1.S1_at--603--3451Chr04:29846377..29846401 (25 bp)
CAGTGAGCTCAGTTACCCAGTTAGT
LOC_Os04g50820
Os.53097.1.S1_at--118--5211Chr04:29846410..29846434 (25 bp)
GAATTGGTTTCGCTCCAATGGAGTT
LOC_Os04g50820
Target Sequence 
GGCGCCGTGTTCAACTACCTGGTGTTCCGCCGCCGCAAGGCGTGGTGGCAGCGGTACAACTACGTGCTGTCGGCGGCGAT
GGACGCCGGCGTGGCCATCATGGGCGTGCTCATCTACTTCTGCCTGTCCAGCCGCGGCATCACCCCAGACTGGTGGGGCA
ACAGCGACATCAACATCGACCACTGCGACCTCTCCACCTGCCCCACCGCCAAGGGCGTCATTGTGGAGGGATGTCCCGTC
TTCTGATCGATCATCCATCCAATATACATATTTCCCCCGTAGATGTGTTCTTCGTGCGAAACTAGATCAGTAAAATCAAT
CAGAATCTGAATCTCTACTCGTTTAATATGGCAGGACTGATGCTGTTCTTATTTAAAGTTGTATATATCATTTGGGTTTT
TAGGTTTCCAAATGCTCTTCTTTTTCGTGTTTTAACCAAGTTCAGTGAGCTCAGTTACCCAGTTAGTATATTATAGAATT
GGTTTCGCTCCAATGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis