Browse Element(s) Details


Os.53126.1.S1_at

Description gb:AK070939.1
DB_XREF= gi:32980962
TID=Os.53126.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069K05, full insert sequence.
FL= gb:AK070939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4117011/11Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os08g315601/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41130OsAffx.1705.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41130Os.27131.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41140Os.7037.1.A1_s_at7/1112+25454030..25460115expressed protein
LOC_Os12g41150NANA12+25465655..25466982retrotransposon, putative, centromere-specific
LOC_Os12g41160OsAffx.7853.1.S1_x_at11/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41160OsAffx.25518.1.S1_x_at2/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41180Os.23412.1.S1_at11/1112+25484627..25488656LSTK-1-like kinase, putative, expressed
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009932biological_processcell tip growth
GO:0010053biological_processroot epidermal cell differentiation
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0005737cellular_componentcytoplasm
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53126.1.S1_at--112--8911Chr12:25482808..25482832 (25 bp)
TGAGCCCCAGAAGCCCAATGAGCGA
LOC_Os12g41170
Os.53126.1.S1_at--915--3191Chr12:25482823..25482847 (25 bp)
CAATGAGCGAACTGCGGAGGCCGCT
LOC_Os12g41170
Os.53126.1.S1_at--1009--7831Chr12:25482959..25482983 (25 bp)
GGTACAGCCTGACAACGAATCCAAC
LOC_Os12g41170
Os.53126.1.S1_at--217--3031Chr12:25482976..25483000 (25 bp)
AATCCAACAATGCTTACTCTATAGT
LOC_Os12g41170
Os.53126.1.S1_at--662--8831Chr12:25483005..25483029 (25 bp)
TGATCTTGGGTGTTCAGGGTCAGCT
LOC_Os12g41170
Os.53126.1.S1_at--231--7491Chr12:25483031..25483055 (25 bp)
GTGGTTTATACTGTCCAACTGGAAA
LOC_Os12g41170
Os.53126.1.S1_at--1094--5911Chr12:25483067..25483091 (25 bp)
GAGCATTTCGTTGTCCTCATTTGAA
LOC_Os12g41170
Os.53126.1.S1_at--225--8831Chr12:25483105..25483129 (25 bp)
TGATTGCAGCAATGATCCATCGTCA
LOC_Os12g41170
Os.53126.1.S1_at--512--571Chr12:25483119..25483143 (25 bp)
ATCCATCGTCAGTAGGGTATCAAGA
LOC_Os12g41170
Os.53126.1.S1_at--250--5512Chr12:25483212..25483236 (25 bp)
GAACAATTGCTACTGAACACCATTT
LOC_Os12g41170
Os.53126.1.S1_at--381--5571Chr12:25483253..25483277 (25 bp)
GAAAGATTCAACTGCAATGCCTAGG
LOC_Os12g41170
Target Sequence 
TGAGCCCCAGAAGCCCAATGAGCGAACTGCGGAGGCCGCTGCACATGCCATTCAGCCCGGTGCGCAAGGCGGTATCGCCT
TCGCCATCCTCATCGTCTTCCACCGTTACATCGCCCAGGAACGCTGGTGAAGACCAGAAGCCCAGGCAAATGGTACAGCC
TGACAACGAATCCAACAATGCTTACTCTATAGTTTGATGATCTTGGGTGTTCAGGGTCAGCTGGTGGTTTATACTGTCCA
ACTGGAAATTGGAAGGTATGAGCATTTCGTTGTCCTCATTTGAATGCATAGGTACACTGATTGCAGCAATGATCCATCGT
CAGTAGGGTATCAAGACAGAATAATTCAAAATATTTTGTCTCGCAAAATTTTGTAAGGAGGGTGGTTAATCTGTAGAATG
GACAGAACAATTGCTACTGAACACCATTTATCAGCATGTATATAGGAAAGATTCAACTGCAATGCCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis