Browse Element(s) Details


Os.53129.1.S1_at

Description gb:AK070947.1
DB_XREF= gi:32980970
TID=Os.53129.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072C12, full insert sequence.
FL= gb:AK070947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2820011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53129.1.S1_at--868--7011Chr04:16476710..16476734 (25 bp)
GTACATACCTACAACTTGATGATAT
LOC_Os04g28200
Os.53129.1.S1_at--528--3571Chr04:16476713..16476737 (25 bp)
CATACCTACAACTTGATGATATCAA
LOC_Os04g28200
Os.53129.1.S1_at--551--5131Chr04:16476995..16477019 (25 bp)
GCAAAGTATCAGTTTCTTTAGTTAG
LOC_Os04g28200
Os.53129.1.S1_at--255--10171Chr04:16477001..16477025 (25 bp)
TATCAGTTTCTTTAGTTAGCTTGGC
LOC_Os04g28200
Os.53129.1.S1_at--829--3431Chr04:16477004..16477028 (25 bp)
CAGTTTCTTTAGTTAGCTTGGCACT
LOC_Os04g28200
Os.53129.1.S1_at--476--332Chr04:16477033..16477057 (25 bp)
ATACATTGTTGTATCTGAAATTACA
LOC_Os04g28200
Os.53129.1.S1_at--99--10491Chr04:16477053..16477077 (25 bp)
TTACATTAAACATATGGCACTCTTG
LOC_Os04g28200
Os.53129.1.S1_at--128--3571Chr04:16477056..16477080 (25 bp)
CATTAAACATATGGCACTCTTGAGT
LOC_Os04g28200
Os.53129.1.S1_at--19--2411Chr04:16477060..16477084 (25 bp)
AAACATATGGCACTCTTGAGTTTAT
LOC_Os04g28200
Os.53129.1.S1_at--306--8251Chr04:16477068..16477092 (25 bp)
GGCACTCTTGAGTTTATTGTGCTCC
LOC_Os04g28200
Os.53129.1.S1_at--556--2011Chr04:16477071..16477095 (25 bp)
ACTCTTGAGTTTATTGTGCTCCTAC
LOC_Os04g28200
Target Sequence 
GTACATACCTACAACTTGATGATATCAAATCTTATAAAAGAAGAGTCATACGAAGAGGCTGACAATCTCTTTATATCAGT
GGAGAAGAGTGGCCGTGCTCCTGACTCTCGTCTTCTTAATCATATCGTCAGGATGTTACTCAAGAAAGCTGAGGTTGCCA
AAGCTAGTAATTATCTGTCTATAATTGACGAGAATAACCTCACTCTTGAAGCTTCAACTATTTCTTTACTGGCTTCTCTC
TTCTCAAGGGAAGGTAAATGTCGGGAGCATATAAAATTGCTCCCTGCAAAGTATCAGTTTCTTTAGTTAGCTTGGCACTN
NTAATACATTGTTGTATCTGAAATTACATTAAACATATGGCACTCTTGAGTTTATTGTGCTCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis