Browse Element(s) Details


Os.53194.1.S1_at

Description gb:AK100171.1
DB_XREF= gi:32985380
TID=Os.53194.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025H05, full insert sequence.
FL= gb:AK071304.1 gb:AK100171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4852011/11Glyoxal oxidase N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein
LOC_Os05g48480OsAffx.28933.1.S1_x_at9/115+27706932..27707806hypothetical protein
LOC_Os05g48489OsAffx.26611.1.S1_x_at11/115+27709101..27710473hypothetical protein
LOC_Os05g48489OsAffx.26611.2.S1_at1/115+27709101..27710473hypothetical protein
LOC_Os05g48500Os.9102.2.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.27368.1.A1_at11/115+27710172..27715109expressed protein
LOC_Os05g48500Os.9102.1.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.16132.1.S1_at1/115+27710172..27715109expressed protein
LOC_Os05g48510Os.5132.1.S1_at11/115+27717677..27724156phenylalanyl-tRNA synthetase beta chain, putative, expressed
LOC_Os05g48520Os.53194.1.S1_at11/115+27723814..27726424Glyoxal oxidase N-terminus family protein, expressed
LOC_Os05g48530OsAffx.25936.1.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.7.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.2.S1_x_at5/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.5.S1_x_at1/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48540NANA5+27733571..27733831hypothetical protein
LOC_Os05g48550Os.10827.1.S1_x_at7/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48550Os.46055.2.S1_x_at4/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48560OsAffx.15151.1.S1_at8/115+27740076..27744619expressed protein
LOC_Os05g48570OsAffx.27370.1.S1_at11/115+27749734..27751250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53194.1.S1_at--731--9211Chr05:27724618..27724642 (25 bp)
TACGGGACCAAGTTCACGTTCAGGT
LOC_Os05g48520
Os.53194.1.S1_at--533--671Chr05:27724510..27724534 (25 bp)
ATGAACCAGCGCTTGCTCGTGCTGC
LOC_Os05g48520
Os.53194.1.S1_at--586--8251Chr05:27724461..27724485 (25 bp)
GGCAGATGTACGAGCTCACCGTCGA
LOC_Os05g48520
Os.53194.1.S1_at--813--6891Chr05:27724384..27724408 (25 bp)
GTATCCAAGGACGTGCCCAGCGAGG
LOC_Os05g48520
Os.53194.1.S1_at--248--1651Chr05:27724366..27724390 (25 bp)
AGCGAGGCCGCTTGGGTCAAAATAC
LOC_Os05g48520
Os.53194.1.S1_at--222--9811Chr05:27724327..27724351 (25 bp)
TAACTAATCCATGTACACTCTTCCT
LOC_Os05g48520
Os.53194.1.S1_at--475--9251Chr05:27724291..27724315 (25 bp)
TCCTGTGTCTGTTACCCCTTTTACT
LOC_Os05g48520
Os.53194.1.S1_at--897--4051Chr05:27724235..27724259 (25 bp)
CGACCAAACTGGTGCTTTCTTGTGC
LOC_Os05g48520
Os.53194.1.S1_at--365--10331Chr05:27724220..27724244 (25 bp)
TTTCTTGTGCTCTATCGTATGCTTG
LOC_Os05g48520
Os.53194.1.S1_at--290--6911Chr05:27724204..27724228 (25 bp)
GTATGCTTGCGCTAGAAATATGACC
LOC_Os05g48520
Os.53194.1.S1_at--92--10091Chr05:27724163..27724187 (25 bp)
TAGGTGTAGCTGGTCTCCACAAATT
LOC_Os05g48520
Target Sequence 
TACGGGACCAAGTTCACGTTCAGGTTCCACACGCCGGTGGCGGCGGTGGAGTGGGGCGACGTGAGGGTGACCATGTACGC
GCCGCCCTTCACGACGCACGGCTACTCCATGAACCAGCGCTTGCTCGTGCTGCCCGTCGCCGGCTTCTCGGCGCAGGGGC
AGATGTACGAGCTCACCGTCGACACGCCGCGGAAGCCGGAGCTCGCGCCGCCGGGGTACTACCTCGTCTACGTCGTATCC
AAGGACGTGCCCAGCGAGGCCGCTTGGGTCAAAATACAGTAAATGTTGGTGTAACTAATCCATGTACACTCTTCCTCTCT
CTTTTTTTCCTGTGTCTGTTACCCCTTTTACTTAGGTAGGGAAGGTATATACGGATATCAGATCGACCAAACTGGTGCTT
TCTTGTGCTCTATCGTATGCTTGCGCTAGAAATATGACCATGCACAAAGTGATTTTAGGTGTAGCTGGTCTCCACAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis