Browse Element(s) Details


Os.53209.1.S1_at

Description gb:AK071364.1
DB_XREF= gi:32981387
TID=Os.53209.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098J07, full insert sequence.
FL= gb:AK071364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2513011/11OB-fold nucleic acid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed
LOC_Os03g25130Os.53209.1.S1_at11/113+14336791..14337939OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g25140Os.18146.1.S1_a_at11/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.54723.1.S1_at2/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.37075.1.S1_at1/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25150OsAffx.13016.1.S1_x_at9/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.13016.1.S1_at8/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.21820.2.S1_x_at1/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.21820.1.S1_x_at1/113+14360154..14361924transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53209.1.S1_at--524--10291Chr03:14337336..14337360 (25 bp)
TTTCTGGTGGACGATGGCACCGGAT
LOC_Os03g25130
Os.53209.1.S1_at--661--1711Chr03:14337284..14337308 (25 bp)
ACCACTACCTGAATGCTGCGAGCAG
LOC_Os03g25130
Os.53209.1.S1_at--973--4251Chr03:14337193..14337217 (25 bp)
CCTGGGCACTCTGTTGAGGGTTCGA
LOC_Os03g25130
Os.53209.1.S1_at--213--1011Chr03:14337165..14337189 (25 bp)
AGGATTGTATTGTACCGTGGTGCGA
LOC_Os03g25130
Os.53209.1.S1_at--644--3991Chr03:14337150..14337174 (25 bp)
CGTGGTGCGATCCAGATTGCTGTTA
LOC_Os03g25130
Os.53209.1.S1_at--388--7911Chr03:14337080..14337104 (25 bp)
GGTTGCAATGTATTCGCATGGCCAA
LOC_Os03g25130
Os.53209.1.S1_at--1003--931Chr03:14337056..14337080 (25 bp)
AGGAATGTTACGATCTGCGGCCGCC
LOC_Os03g25130
Os.53209.1.S1_at--841--3831Chr03:14337029..14337053 (25 bp)
CTGCTTGAGGCTCATCTCGGAGGAA
LOC_Os03g25130
Os.53209.1.S1_at--1060--4991Chr03:14336920..14336944 (25 bp)
GCATGTGACAAGCTCTGTTGTTATT
LOC_Os03g25130
Os.53209.1.S1_at--706--5691Chr03:14336889..14336913 (25 bp)
GACTTTTGGGTTCATTCTGTTGGAT
LOC_Os03g25130
Os.53209.1.S1_at--214--10491Chr03:14336856..14336880 (25 bp)
TTAAGCATCAGGGTTGTTCACTTGT
LOC_Os03g25130
Target Sequence 
TTTCTGGTGGACGATGGCACCGGATGCGTGCCGTGCGTGCTGTGGCTGAACCACCACTACCTGAATGCTGCGAGCAGTTC
ATCCAGGGCATCAGATTCTGATCCAACTGCAGAGATGGCGTTGAGGATGTCAGAGGTGGTGAGCCTGGGCACTCTGTTGA
GGGTTCGAGGCAGGATTGTATTGTACCGTGGTGCGATCCAGATTGCTGTTAGAGATGTTGTTCTGGAGAAGGACCCTAAT
GTGGAGGTGATGCATTGGTTGCAATGTATTCGCATGGCCAAGGAATGTTACGATCTGCGGCCGCCTTCTGCTTGAGGCTC
ATCTCGGAGGAAGTTCGTGCAATGTAATGTTCAGAATATGTTTGATGTTTCTTTGTGGAATTGCTGAAGATTTGAACTGT
GAGACAATCCTGTAATGCATGTGACAAGCTCTGTTGTTATTTGCAGAGACTTTTGGGTTCATTCTGTTGGATTTACCCCA
TTAAGCATCAGGGTTGTTCACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis