Browse Element(s) Details


Os.53259.1.A1_at

Description gb:AK071624.1
DB_XREF= gi:32981647
TID=Os.53259.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106M18, full insert sequence.
FL= gb:AK071624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3309011/11LOB domain protein 37, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33050Os.24831.3.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.1.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.4.S1_x_at1/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33060Os.46314.2.S1_x_at7/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_x_at3/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.10731.2.A1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060OsAffx.8785.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.47114.1.S1_x_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33070NANA3+18877363..18878008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g33074NANA3+18880611..18880893hypothetical protein
LOC_Os03g33080OsAffx.22421.1.S1_at3/113+18881397..18884091transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g33090Os.53259.1.A1_at11/113+18890072..18891221LOB domain protein 37, putative, expressed
LOC_Os03g33100OsAffx.8864.1.S1_at8/113+18892422..18898625retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33100Os.46273.1.S1_at2/113+18892422..18898625retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33110OsAffx.31069.5.S1_x_at11/113+18902987..18905006hypothetical protein
LOC_Os03g33110OsAffx.31069.5.S1_at11/113+18902987..18905006hypothetical protein
LOC_Os03g33120OsAffx.10632.1.S1_at1/113+18905246..18906333retrotransposon protein, putative, unclassified
LOC_Os03g33130NANA3+18908112..18911229retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33140NANA3+18912444..18915994retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53259.1.A1_at--936--10591Chr03:18890538..18890562 (25 bp)
TTCTCCACTGCGAAGCGGGTGAGGA
LOC_Os03g33090
Os.53259.1.A1_at--878--5271Chr03:18890515..18890539 (25 bp)
GAAGGCCGAGGTACCTGAAGCCCCG
LOC_Os03g33090
Os.53259.1.A1_at--546--5811Chr03:18890413..18890437 (25 bp)
GACGCCGTCAATGAGCTCCGATGAG
LOC_Os03g33090
Os.53259.1.A1_at--1001--4591Chr03:18890369..18890393 (25 bp)
GCGAAAGGGATCCTGTGCTGCTCAA
LOC_Os03g33090
Os.53259.1.A1_at--157--3891Chr03:18890357..18890381 (25 bp)
CTGTGCTGCTCAACCTTTTTGTCTG
LOC_Os03g33090
Os.53259.1.A1_at--754--3671Chr03:18890343..18890367 (25 bp)
CTTTTTGTCTGAGGCCGGTCGTCAA
LOC_Os03g33090
Os.53259.1.A1_at--602--891Chr03:18890332..18890356 (25 bp)
AGGCCGGTCGTCAAGCTAGCTAATA
LOC_Os03g33090
Os.53259.1.A1_at--935--3731Chr03:18890313..18890337 (25 bp)
CTAATACTAATCCTTGCTTGACCTC
LOC_Os03g33090
Os.53259.1.A1_at--1050--8331Chr03:18890273..18890297 (25 bp)
GGCGGCGAAGCAGTAGTAATTTTTT
LOC_Os03g33090
Os.53259.1.A1_at--185--4491Chr03:18890245..18890269 (25 bp)
GCCGGCGAGCCTAGTTTATTGGCAT
LOC_Os03g33090
Os.53259.1.A1_at--643--7131Chr03:18890179..18890203 (25 bp)
GTCTTGGTTTTTGCCGTGTACGTAG
LOC_Os03g33090
Target Sequence 
TTCTCCACTGCGAAGCGGGTGAGGAAGGCCGAGGTACCTGAAGCCCCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCNG
CTCTCCGCCGGCGGTGGGGGAGAGGAAACCAGCACTNCGGCCGGGGACGCCGTCAATGAGCTCCGATGAGTCCGGCACCA
CAACCGGAGGCGAAAGGGATCCTGTGCTGCTCAACCTTTTTGTCTGAGGCCGGTCGTCAAGCTAGCTAATACTAATCCTT
GCTTGACCTCCGTCTACTGGATCCCGGCGGCGAAGCAGTAGTAATTTTTTCTCGCCGGCGAGCCTAGTTTATTGGCATTT
TTTTTTNTTTCCCTTTCTTTTAGGAGTACTAGTCTACGNGTCTTGGTTTTTGCCGTGTACGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53259.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis