Browse Element(s) Details


Os.53281.1.S1_s_at

Description gb:AK071778.1
DB_XREF= gi:32981801
TID=Os.53281.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113L07, full insert sequence.
FL= gb:AK071778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0461011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04560Os.51216.1.S1_a_at11/112+2037530..2040432RNA recognition motif family protein, expressed
LOC_Os02g04570OsAffx.2506.1.S1_at11/112+2041370..2044121hypothetical protein
LOC_Os02g04580NANA2+2047914..2048255retrotransposon protein, putative, unclassified
LOC_Os02g04590OsAffx.11889.1.S1_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04590OsAffx.11889.1.S1_x_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53281.1.S1_s_at--1101--8371Chr02:2065331..2065355 (25 bp)
GGCGACGCGCGATTTCTGCCAAGAA
LOC_Os02g04610
Os.53281.1.S1_s_at--304--1831Chr02:2065335..2065359 (25 bp)
ACGCGCGATTTCTGCCAAGAACTCA
LOC_Os02g04610
Os.53281.1.S1_s_at--615--4631Chr02:2065339..2065363 (25 bp)
GCGATTTCTGCCAAGAACTCAAGCC
LOC_Os02g04610
Os.53281.1.S1_s_at--1041--8111Chr02:2065370..2065394 (25 bp)
GGACTGGAAGCTGGTGTCATCCCAT
LOC_Os02g04610
Os.53281.1.S1_s_at--435--8191Chr02:2065375..2065399 (25 bp)
GGAAGCTGGTGTCATCCCATCTGGT
LOC_Os02g04610
Os.53281.1.S1_s_at--181--6731Chr02:2065418..2065442 (25 bp)
GTTCTGCATCGCAAGATTCTTCGAA
LOC_Os02g04610
Os.53281.1.S1_s_at--452--5291Chr02:2065599..2065623 (25 bp)
GAATGGGTGCTGTAATATTTATCTA
LOC_Os02g04610
Os.53281.1.S1_s_at--182--8611Chr02:2065602..2065626 (25 bp)
TGGGTGCTGTAATATTTATCTAGTC
LOC_Os02g04610
Os.53281.1.S1_s_at--220--6531Chr02:2065638..2065662 (25 bp)
GATTTGTGCAAATAGATGAACTCAG
LOC_Os02g04610
Os.53281.1.S1_s_at--1033--4931Chr02:2065665..2065689 (25 bp)
GCATTGGATATGCTGGTGCTTCAAC
LOC_Os02g04610
Os.53281.1.S1_s_at--337--2051Chr02:2065708..2065732 (25 bp)
ACTTTTTATCTCTATCAAGTTTTAG
LOC_Os02g04610
Target Sequence 
GGCGACGCGCGATTTCTGCCAAGAACTCAAGCCACCCAAGGACTGGAAGCTGGTGTCATCCCATCTGGTGCACCTGGGAT
CCGGCAGGTTCTGCATCGCAAGATTCTTCGAAAAGCCGGTCAAGATTCCAGTGTGCTGCGTCTGCGACATGGATACGCAG
ACGTACGGCGTCTTCACCGGCGTGGAGGTGAAGAAGCCGGGAAGAGGCCTACGGCTACGGATGGTCAAGCACAGATCAGA
ATGTTATCGCTTCGATGACCACATTAAGGAATGGGTGCTGTAATATTTATCTAGTCTTTTTTAGAAAGATTTGTGCAAAT
AGATGAACTCAGTAGCATTGGATATGCTGGTGCTTCAACACCTTGAACACTAGCACAACTTTTTATCTCTATCAAGTTTT
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53281.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis