Browse Element(s) Details


Os.53386.1.S1_at

Description gb:AK072369.1
DB_XREF= gi:32982392
TID=Os.53386.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full insert sequence.
FL= gb:AK072369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2636011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53386.1.S1_at--283--2231Chr09:15921191..15921215 (25 bp)
ACAAGGCCGGGTACATGCCGTGGAA
LOC_Os09g26360
Os.53386.1.S1_at--1055--4271Chr09:15921022..15921046 (25 bp)
CCTGCACGCAAAGCCATGGATCGAT
LOC_Os09g26360
Os.53386.1.S1_at--371--1171Chr09:15920978..15921002 (25 bp)
AGTACGACTTCTTCACTTGAATCCG
LOC_Os09g26360
Os.53386.1.S1_at--360--2051Chr09:15920964..15920988 (25 bp)
ACTTGAATCCGAACGACCCTAGCTA
LOC_Os09g26360
Os.53386.1.S1_at--95--10011Chr09:15920945..15920969 (25 bp)
TAGCTACCCGTAGCGGATCGGAGGA
LOC_Os09g26360
Os.53386.1.S1_at--105--1331Chr09:15920869..15920893 (25 bp)
AGAGTTTCGGCTGTCACTATACACG
LOC_Os09g26360
Os.53386.1.S1_at--387--1051Chr09:15920829..15920853 (25 bp)
AGGTGTACGCATGAACTCGCTTGTT
LOC_Os09g26360
Os.53386.1.S1_at--899--1231Chr09:15920787..15920811 (25 bp)
AGTTGAACGCGTGCTGTGTGCCTTA
LOC_Os09g26360
Os.53386.1.S1_at--194--7471Chr09:15920772..15920796 (25 bp)
GTGTGCCTTAGTTTTCATTTGCGTT
LOC_Os09g26360
Os.53386.1.S1_at--248--3591Chr09:15920757..15920781 (25 bp)
CATTTGCGTTTGTATACTGGCTGTA
LOC_Os09g26360
Os.53386.1.S1_at--536--1951Chr09:15920742..15920766 (25 bp)
ACTGGCTGTACGTATGTGTTTATGT
LOC_Os09g26360
Target Sequence 
ACAAGGCCGGGTACATGCCGTGGAACGGCGAGTTCGCGCTCAAGACGCTCTACTACGCCGAGTACGCCAACAAGGGGCCC
GGCGCCGACACGGCGGGGCGCGTCGCGTGGCCGGGGTACAAGAAGGTGATCAGCAAGGCGGACGCGACCAAGTTCACCGT
CGACAACTTCCTGCACGCAAAGCCATGGATCGATCCCACCGGCACGCCGGTCAAGTACGACTTCTTCACTTGAATCCGAA
CGACCCTAGCTACCCGTAGCGGATCGGAGGAAGTCGAGAGGACAGGTAGGGGGGTTTCGTTGGATATATCTTGGATGGCG
AAAGAGTTTCGGCTGTCACTATACACGAGTGGAAATGTTGCGAGGTGTACGCATGAACTCGCTTGTTGATCAGATATTGA
TCAGAGTTGAACGCGTGCTGTGTGCCTTAGTTTTCATTTGCGTTTGTATACTGGCTGTACGTATGTGTTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis