Browse Element(s) Details


Os.53434.1.S1_at

Description gb:AK072602.1
DB_XREF= gi:32982625
TID=Os.53434.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125L05, full insert sequence.
FL= gb:AK072602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28
LOC_Os03g41150OsAffx.3469.1.S1_x_at11/113+22834620..22835063hypothetical protein
LOC_Os03g41154NANA3+22837036..22837236hypothetical protein
LOC_Os03g41160OsAffx.3470.1.S1_at11/113+22839409..22840241hypothetical protein
LOC_Os03g41170Os.53434.1.S1_at11/113+22847035..22850167expressed protein
LOC_Os03g41180Os.46306.1.S1_x_at8/113+22855491..22858586transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_at5/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41190Os.45976.1.S1_x_at2/113+22861252..22864563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g41200Os.11349.1.S1_at11/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41200Os.11685.1.S1_at11/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41200OsAffx.19758.1.S1_at1/113+22865946..22873148transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g41210OsAffx.10222.1.S1_x_at2/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41210Os.45902.1.A1_x_at1/113+22873337..22877464Zinc knuckle family protein
LOC_Os03g41210OsAffx.10222.1.S1_at1/113+22873337..22877464Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53434.1.S1_at--416--991Chr03:22848059..22848083 (25 bp)
AGGAGGCCCAATTTTTCTTCACATA
LOC_Os03g41170
Os.53434.1.S1_at--1130--3451Chr03:22847985..22848009 (25 bp)
CAGTGCATGTGTCAGCATTACGAAT
LOC_Os03g41170
Os.53434.1.S1_at--850--8611Chr03:22847925..22847949 (25 bp)
TGGTGAATCATTTGGCAGCCTCCGA
LOC_Os03g41170
Os.53434.1.S1_at--790--8251Chr03:22847912..22847936 (25 bp)
GGCAGCCTCCGAAAAGCAATCAAGA
LOC_Os03g41170
Os.53434.1.S1_at--438--9791Chr03:22847304..22847328 (25 bp)
TAAGCAATTCGATCCATTGTCGTGG
LOC_Os03g41170
Os.53434.1.S1_at--613--4711Chr03:22847248..22847272 (25 bp)
GCTGGCCAGAATTTTTCATTGTTGC
LOC_Os03g41170
Os.53434.1.S1_at--905--5671Chr03:22847205..22847229 (25 bp)
GACATTCATGCTCTGGATTCTGGTA
LOC_Os03g41170
Os.53434.1.S1_at--81--2351Chr03:22847152..22847176 (25 bp)
AAAGCATGGTGCCTTGGACTATGTA
LOC_Os03g41170
Os.53434.1.S1_at--1007--5691Chr03:22847136..22847160 (25 bp)
GACTATGTAGGTTGATCCCCTTGTT
LOC_Os03g41170
Os.53434.1.S1_at--123--4191Chr03:22847119..22847143 (25 bp)
CCCTTGTTTCCTGCTGTTATATTAA
LOC_Os03g41170
Os.53434.1.S1_at--760--752Chr05:3062867..3062886 (20 bp)
ATGTACACGGCCAAACTTGCTTGTC
NONE
Target Sequence 
AGGAGGCCCAATTTTTCTTCACATAGGAAAAGTTGTTGGGATGATGTCATCAGGAGATTTCTCAAAGAGTTATGCAGTGC
ATGTGTCAGCATTACGAATAGCTTTTGAGGAAGCAAAGAAATTATACAGCAAGCTGGTGAATCATTTGGCAGCCTCCGAA
AAGCAATCAAGAGACAAAAATGAAGGCAAAAATGAATCCAACAAATCGAATGAAAAGTGAAGGAAAAAAATGATGTTAAG
GAAGTAGATTGGAGCAAACAATGGTGAAATAAGCAATTCGATCCATTGTCGTGGATTGTCAATTTGGGATTTGACGAGAT
AATTAGCTGGCCAGAATTTTTCATTGTTGCACAAAATGCATGCTTCATGACATTCATGCTCTGGATTCTGGTAAAATACA
GTAACATAAATTTAAACATCAAAAGCATGGTGCCTTGGACTATGTAGGTTGATCCCCTTGTTTCCTGCTGTTATATTAAA
CTTGCTTGTATAATTTTTTTTTTTAGAAAATGGGATAAACCCAACCTCTACATCCAATGTACACGGCCAAACTTGCTTGT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis