Browse Element(s) Details


Os.53517.2.S1_at

Description gb:AK073051.1
DB_XREF= gi:32983074
TID=Os.53517.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000F22, full insert sequence.
FL= gb:AK073051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g044001/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA
LOC_Os11g04420Os.6869.1.S1_s_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.6869.1.S1_at11/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.1.A1_a_at9/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.27194.2.A1_x_at6/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420OsAffx.30813.1.A1_at4/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S2_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.4757.1.S1_at2/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04420Os.12342.1.S1_at1/1111+1837690..1846851Uncharacterised protein family containing protein, expressed
LOC_Os11g04430NANA11+1846679..1846891hypothetical protein
LOC_Os11g04440Os.52082.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440Os.52539.1.S1_at10/1111+1848547..1852977Mitochondrial glycoprotein, expressed
LOC_Os11g04440OsAffx.18660.1.S1_at8/1111+1848547..1852977Mitochondrial glycoprotein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53517.2.S1_at--668--551Chr11:1831020..1831044 (25 bp)
ATCCTGTACGCTCACTCGGCGTGGG
LOC_Os11g04400
Os.53517.2.S1_at--1129--791Chr11:1831110..1831134 (25 bp)
ATGGGAATGCGTGTTTGCTTCTGTA
NONE
Os.53517.2.S1_at--728--6851Chr11:1831122..1831146 (25 bp)
GTTTGCTTCTGTAACGTTGATCAGT
NONE
Os.53517.2.S1_at--545--8991Chr11:1831146..1831170 (25 bp)
TGAAGCTATGGAGCGTTTCTTCCCT
NONE
Os.53517.2.S1_at--1097--10531Chr11:1831162..1831186 (25 bp)
TTCTTCCCTGGAGCAACTAGCGTTG
NONE
Os.53517.2.S1_at--102--5691Chr11:1831189..1831213 (25 bp)
GACTTGGAGAGCTCACAACTCACAA
NONE
Os.53517.2.S1_at--1052--10071Chr11:1831227..1831251 (25 bp)
TAGTGGCAATGATCCTTTCAGCTCG
NONE
Os.53517.2.S1_at--1021--2991Chr11:1831234..1831258 (25 bp)
AATGATCCTTTCAGCTCGGGACGAG
NONE
Os.53517.2.S1_at--582--7631Chr11:1831251..1831275 (25 bp)
GGGACGAGCGTTCATTGTCCACTAA
NONE
Os.53517.2.S1_at--93--8711Chr11:1831266..1831290 (25 bp)
TGTCCACTAATGTCATACCGGGATG
NONE
Os.53517.2.S1_at--919--6891Chr11:1831290..1831314 (25 bp)
GTATCATGTATGAAGGCTAGCTCAG
NONE
Target Sequence 
ATCCTGTACGCTCACTCGGCGTGGGTCGTGGCAGAGGATGGTGCGCACTAGGCAGCAGGCGCCGGTGGTGGTGTTCGTGT
GTGTTCTGGGATGGGAATGCGTGTTTGCTTCTGTAACGTTGATCAGTGAAGCTATGGAGCGTTTCTTCCCTGGAGCAACT
AGCGTTGGAGACTTGGAGAGCTCACAACTCACAAGAGTAAACAAGTTTAGTGGCAATGATCCTTTCAGCTCGGGACGAGC
GTTCATTGTCCACTAATGTCATACCGGGATGTATCATGTATGAAGGCTAGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53517.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis