Browse Element(s) Details


Os.53694.1.S1_at

Description gb:AK073971.1
DB_XREF= gi:32983994
TID=Os.53694.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075D05, full insert sequence.
FL= gb:AK073971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1187411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11830Os.35344.18.S1_x_at10/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830Os.35344.3.S1_x_at9/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11830OsAffx.22940.5.S1_x_at3/113+6168273..6172722Transposable element protein, putative, MuDR
LOC_Os03g11840Os.50168.1.S1_at11/113+6182247..6183110expressed protein
LOC_Os03g11850NANA3+6186002..6190381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g11860NANA3+6191493..6195746hypothetical protein
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53694.1.S1_at--28--6691Chr03:6197334..6197358 (25 bp)
GTTGCCATGGTTGGTAACTTGGATG
LOC_Os03g11874
Os.53694.1.S1_at--1054--7911Chr03:6197326..6197350 (25 bp)
GGTTGGTAACTTGGATGTCGGATCA
LOC_Os03g11874
Os.53694.1.S1_at--1054--7971Chr03:6197314..6197338 (25 bp)
GGATGTCGGATCATTATTACCCAGT
LOC_Os03g11874
Os.53694.1.S1_at--775--7191Chr03:6197310..6197334 (25 bp)
GTCGGATCATTATTACCCAGTATTT
LOC_Os03g11874
Os.53694.1.S1_at--747--8631Chr03:6197280..6197304 (25 bp)
TGTAACTTAAGGTGTGTTGTCCTTT
LOC_Os03g11874
Os.53694.1.S1_at--1114--7731Chr03:6197270..6197294 (25 bp)
GGTGTGTTGTCCTTTATGTTTTAAG
LOC_Os03g11874
Os.53694.1.S1_at--664--6813Chr03:15121601..15121661 (25 bp)
GTTTTAAGTTATTTGTTGTGTCCAT
NONE
Os.53694.1.S1_at--697--7451Chr03:6197236..6197260 (25 bp)
GTGTCCATTGTTTAGGTATGTGCCT
LOC_Os03g11874
Os.53694.1.S1_at--619--7851Chr03:6197222..6197246 (25 bp)
GGTATGTGCCTTGGTTAATTTATTA
LOC_Os03g11874
Os.53694.1.S1_at--335--7451Chr03:6197186..6197210 (25 bp)
GTGTAACTTGAGATGTGTCGTGCTT
LOC_Os03g11874
Os.53694.1.S1_at--243--6271Chr03:6197175..6197199 (25 bp)
GATGTGTCGTGCTTTACGTTTTGAG
LOC_Os03g11874
Target Sequence 
GTTGCCATGGTTGGTAACTTGGATGTCGGATCATTATTACCCAGTATTTAATTTTGTAACTTAAGGTGTGTTGTCCTTTA
TGTTTTAAGTTATTTGTTGTGTCCATTGTTTAGGTATGTGCCTTGGTTAATTTATTAATAACAGACTTGTGTAACTTGAG
ATGTGTCGTGCTTTACGTTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis