Browse Element(s) Details


Os.53706.1.S1_at

Description gb:AK099402.1
DB_XREF= gi:32984611
TID=Os.53706.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F09, full insert sequence.
FL= gb:AK099402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1242011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12380Os.20204.1.S1_at11/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.3.S1_a_at11/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.1.S1_s_at10/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.1.S1_x_at10/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12390OsAffx.30226.4.S1_x_at5/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.2.S1_s_at5/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.4.S1_at4/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.24587.1.S1_x_at4/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.442.1.S1_x_at4/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.1.S1_x_at3/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.2.S1_x_at3/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.1.S1_at2/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.19052.1.S1_at1/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.442.1.S1_at1/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12400Os.54164.1.S1_at11/112+6468826..6472843Leucine Rich Repeat family protein, expressed
LOC_Os02g12410Os.53025.1.S1_at1/112+6474514..6474992U-box domain-containing protein, putative
LOC_Os02g12420Os.53706.1.S1_at11/112+6476683..6480097Leucine Rich Repeat family protein, expressed
LOC_Os02g12430NANA2+6482468..6483370hypothetical protein
LOC_Os02g12440Os.52024.1.S1_at11/112+6488454..6490577Protein kinase domain containing protein, expressed
LOC_Os02g12450OsAffx.12003.1.S1_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_s_at11/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12450OsAffx.12003.2.S1_at1/112+6491390..6495136Leucine Rich Repeat family protein
LOC_Os02g12460Os.52655.1.S1_x_at2/112+6496710..6497737hypothetical protein
LOC_Os02g12460OsAffx.19426.1.S1_x_at1/112+6496710..6497737hypothetical protein
LOC_Os02g12470Os.30575.1.A1_at5/112+6502150..6504010hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53706.1.S1_at--986--311Chr02:6477242..6477266 (25 bp)
ATACTGTTGCTAGAGATGTTCACCA
LOC_Os02g12420
Os.53706.1.S1_at--637--1611Chr02:6477186..6477210 (25 bp)
AGCGGTTGGGCTTCGCAAGTATGTC
LOC_Os02g12420
Os.53706.1.S1_at--443--3191Chr02:6477144..6477168 (25 bp)
CAATGCGGCTAATGTTCTGGATCAA
LOC_Os02g12420
Os.53706.1.S1_at--771--6231Chr02:6477098..6477122 (25 bp)
GATGGCGGAGCAATCAAGTCAAACT
LOC_Os02g12420
Os.53706.1.S1_at--48--7091Chr02:6477081..6477105 (25 bp)
GTCAAACTCTTACAACGGCAAGGAT
LOC_Os02g12420
Os.53706.1.S1_at--686--2071Chr02:6477047..6477071 (25 bp)
ACTTGTGTCACTTCGGTTATGCGCA
LOC_Os02g12420
Os.53706.1.S1_at--502--6791Chr02:6477032..6477056 (25 bp)
GTTATGCGCATTGGAATCTCCTGCT
LOC_Os02g12420
Os.53706.1.S1_at--1114--4371Chr02:6476879..6476903 (25 bp)
CCAAGATCATTTTTGCGCATGGCAT
LOC_Os02g12420
Os.53706.1.S1_at--635--10431Chr02:6476850..6476874 (25 bp)
TTATGCTCCATGTCATTGAACACAC
LOC_Os02g12420
Os.53706.1.S1_at--1009--9771Chr02:6476822..6476846 (25 bp)
TAAGGTGCCGGAAGCTGCGGATTCT
LOC_Os02g12420
Os.53706.1.S1_at--161--3111Chr02:6476732..6476756 (25 bp)
AATTTGTAAGTGCTGTGCGGCTAAA
LOC_Os02g12420
Target Sequence 
ATACTGTTGCTAGAGATGTTCACCAGAAAAAGACCCACAGACGATGAATTCGGGGAAGCGGTTGGGCTTCGCAAGTATGT
CCAAATGGCATTGCCAGACAATGCGGCTAATGTTCTGGATCAACAGTTACTACCAGAGACAGAAGATGGCGGAGCAATCA
AGTCAAACTCTTACAACGGCAAGGATCTAAGAATTACTTGTGTCACTTCGGTTATGCGCATTGGAATCTCCTGCTCAGAG
GAGGCACCAACGGACCGCGTGCAAATCGGAGACGCTCTGAAGGAGTTGCAAGCAATAAGAGACAAGTTTGAGAAACATGT
GTCCAATGAAGGAACATCAAGCCAATGAAGACAATGAAGCATTCCAAGATCATTTTTGCGCATGGCATGATATTATGCTC
CATGTCATTGAACACACAAATAAGGTGCCGGAAGCTGCGGATTCTGCAGCTTTTTGTTTATGTAAAGCTAGCATCAATTA
CAGAGAGGCTCTATATTATACATGATTGCAAATTTGTAAGTGCTGTGCGGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis