Browse Element(s) Details


Os.53936.1.S1_at

Description gb:AK100934.1
DB_XREF= gi:32986143
TID=Os.53936.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136E13, full insert sequence.
FL= gb:AK100934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1527011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein
LOC_Os03g15240Os.49495.3.S1_at11/113+8316422..8318809expressed protein
LOC_Os03g15250OsAffx.12872.1.S1_x_at11/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15250Os.49495.2.S1_at6/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed
LOC_Os03g15300OsAffx.3249.1.S1_at10/113+8350450..8351682expressed protein
LOC_Os03g15310Os.53217.1.S1_x_at4/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.38172.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.43567.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.29987.1.S1_at1/113+8357062..8359121transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53936.1.S1_at--134--9431Chr03:8332245..8332269 (25 bp)
TCGTGTGCATCTCCGAGCAGGACAT
LOC_Os03g15270
Os.53936.1.S1_at--302--10271Chr03:8332429..8332453 (25 bp)
TTTCGTCAGAGCCAGATAGCCCCAG
LOC_Os03g15270
Os.53936.1.S1_at--613--9791Chr03:8332462..8332486 (25 bp)
TAAGCTTAGCTGACACTCGCCGTGT
LOC_Os03g15270
Os.53936.1.S1_at--925--4151Chr03:8332479..8332503 (25 bp)
CGCCGTGTCACGCTAATTAATCCAT
LOC_Os03g15270
Os.53936.1.S1_at--190--3151Chr03:8332493..8332517 (25 bp)
AATTAATCCATCCTAATCCATCCAA
LOC_Os03g15270
Os.53936.1.S1_at--101--591Chr03:8332520..8332544 (25 bp)
ATCCAACCAGTTTCTGCTGCAGCAG
LOC_Os03g15270
Os.53936.1.S1_at--200--2751Chr03:8332603..8332627 (25 bp)
AAGACAAGCGTTGTCCATCCCAATA
LOC_Os03g15270
Os.53936.1.S1_at--984--231Chr03:8332625..8332649 (25 bp)
ATACCCAACTTGGATCGTCGTAGCG
LOC_Os03g15270
Os.53936.1.S1_at--101--351Chr03:8332675..8332699 (25 bp)
ATAAAAACGACACTGCCGCTATGCC
LOC_Os03g15270
Os.53936.1.S1_at--733--4871Chr03:8332692..8332716 (25 bp)
GCTATGCCACGATGTTGTTGCTCCG
LOC_Os03g15270
Os.53936.1.S1_at--956--6671Chr03:8332708..8332732 (25 bp)
GTTGCTCCGTGTATCATTCATGTTC
LOC_Os03g15270
Target Sequence 
TCGTGTGCATCTCCGAGCAGGACATCCTCCGCGACCGCAACCTGGAGCTCTGCAGCGCGCTGCGCAGGGCCGACCATAGC
GTGGAGCAGGCCACGTACGGCGGCGTCGGGCACGCGTTCCAGGTGCTCAACAACTACCACCTCTCGCAGCCGCGGACGCA
GGAGATGCTCGCCCACATCAAGGCTTTCGTCAGAGCCAGATAGCCCCAGCCAGTGGCTAAGCTTAGCTGACACTCGCCGT
GTCACGCTAATTAATCCATCCTAATCCATCCAACCATCCAACCAGTTTCTGCTGCAGCAGATGATGAGTAGGTGTCGTGT
AAGCTGTAAATTAATTACTTTTGTAGTACGTGTCACTCAAGACAAGCGTTGTCCATCCCAATACCCAACTTGGATCGTCG
TAGCGGTGTCGGAAAGCAAAAGCGTAGCACATAAAAACGACACTGCCGCTATGCCACGATGTTGTTGCTCCGTGTATCAT
TCATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis