Browse Element(s) Details


Os.53975.1.S1_at

Description gb:AK102245.1
DB_XREF= gi:32987454
TID=Os.53975.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088E17, full insert sequence.
FL= gb:AK102245.1 gb:AK101111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein
LOC_Os09g32350OsAffx.30115.1.S1_at9/119+19320884..19322717hypothetical protein
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53975.1.S1_at--398--2371Chr09:19329867..19329891 (25 bp)
AAACCATCAGGTCCAAGTTCACGGC
LOC_Os09g32360
Os.53975.1.S1_at--39--1451Chr09:19329735..19329759 (25 bp)
AGAACCTGGTGAGGCTCTTCCTGGA
LOC_Os09g32360
Os.53975.1.S1_at--531--1091Chr09:19329711..19329735 (25 bp)
AGTGGGACGGCCAACTCACGCCGGC
LOC_Os09g32360
Os.53975.1.S1_at--304--7491Chr09:19329637..19329661 (25 bp)
GTGGTGGACTGACCGAATCCATCCT
LOC_Os09g32360
Os.53975.1.S1_at--1079--3531Chr09:19329618..19329642 (25 bp)
CATCCTCTGCTTCCGTATGATAAGA
LOC_Os09g32360
Os.53975.1.S1_at--1160--9751Chr09:19329598..19329622 (25 bp)
TAAGAGACGATCAGTAGTAGCTTGT
LOC_Os09g32360
Os.53975.1.S1_at--1032--6033Chr05:26660738..26660759 (22 bp)
GAGATCTAGTGAGTGTTTTCTGCAC
NONE
Os.53975.1.S1_at--1043--6111Chr09:19329557..19329581 (25 bp)
GAGTGTTTTCTGCACTTTGAATGGA
LOC_Os09g32360
Os.53975.1.S1_at--344--2971Chr09:19329538..19329562 (25 bp)
AATGGAATGAGTTTGCTGGATGCTT
LOC_Os09g32360
Os.53975.1.S1_at--966--4711Chr09:19329524..19329548 (25 bp)
GCTGGATGCTTAATTTGGTTGATCT
LOC_Os09g32360
Os.53975.1.S1_at--47--451Chr09:19329489..19329513 (25 bp)
ATCTAGTGAGATATCACGCCTTGGC
LOC_Os09g32360
Target Sequence 
AAACCATCAGGTCCAAGTTCACGGCGGAGGGGTTCACGGCGCCGGAGGTGGTGTTCTGGAACGTGGGCGCGCCGGCGTCG
GCGCCGGTGGTGGCTACCGAGGCGAACGCGGCGGTGGTGAGCGGCTACTCCAAGAACCTGGTGAGGCTCTTCCTGGAGTG
GGACGGCCAACTCACGCCGGCCGCCGTCATGGCTGATGCCATCTCCGGCCCGGAGTACGACTCGCTCGAGGTGGTGGACT
GACCGAATCCATCCTCTGCTTCCGTATGATAAGAGACGATCAGTAGTAGCTTGTNTGAGTGAGATCTAGTGAGTGTTTTC
TGCACTTTGAATGGAATGAGTTTGCTGGATGCTTAATTTGGTTGATCTAATGAATGAAATCTAGTGAGATATCACGCCTT
GGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis