Browse Element(s) Details


Os.54045.1.S1_at

Description gb:AK101497.1
DB_XREF= gi:32986706
TID=Os.54045.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043G02, full insert sequence.
FL= gb:AK101497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1042011/11salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54045.1.S1_at--32--1571Chr03:5286184..5286208 (25 bp)
AGCTTTGCTTGTCCTCTGTTGAAGC
LOC_Os03g10420
Os.54045.1.S1_at--1120--9431Chr03:5286291..5286315 (25 bp)
TCTGGAGACATACATGGAACGCCTA
LOC_Os03g10420
Os.54045.1.S1_at--1077--2971Chr03:5286316..5286340 (25 bp)
AATGGGCTATGTACCGGTGGGCAAT
LOC_Os03g10420
Os.54045.1.S1_at--2--5411Chr03:5286346..5286370 (25 bp)
GAAGCTAAAGCCGTTTTGGATGAGA
LOC_Os03g10420
Os.54045.1.S1_at--886--931Chr03:5286445..5286469 (25 bp)
AGGCAAACCCATGCAGCTGGACAGT
LOC_Os03g10420
Os.54045.1.S1_at--1044--4711Chr03:5286460..5286484 (25 bp)
GCTGGACAGTCCACACTATAGATTT
LOC_Os03g10420
Os.54045.1.S1_at--751--2031Chr03:5286474..5286498 (25 bp)
ACTATAGATTTTTGCTCCCGTGGGA
LOC_Os03g10420
Os.54045.1.S1_at--621--7591Chr03:5286502..5286526 (25 bp)
GGGCATGTGACATCATTAGGGCTTT
LOC_Os03g10420
Os.54045.1.S1_at--559--7331Chr03:5286550..5286574 (25 bp)
GTGCTTGGCTACCAGGATTACCATC
LOC_Os03g10420
Os.54045.1.S1_at--667--9471Chr03:5286616..5286640 (25 bp)
TCTGCAGTCAGAACCTTATATTTGT
LOC_Os03g10420
Os.54045.1.S1_at--587--1211Chr03:5286670..5286694 (25 bp)
AGTTTTTTCACTGCACGCTATGTTA
LOC_Os03g10420
Target Sequence 
AGCTTTGCTTGTCCTCTGTTGAAGCCTTCTTCTGCGGATGAAGCAGATGTCAAGGAACATGAGGGTAAACCTGAGGCAGA
ATCCAGTGAAAAAGCACAAGACAATGCTCTGGAGACATACATGGAACGCCTAAATGGGCTATGTACCGGTGGGCAATTGA
AAGAAGCTAAAGCCGTTTTGGATGAGATGATGCAAAAGGGGATGCCTGTTGACAGTTCAACATATATAACTTTGATGGAA
GGGCTTATCAAGAGACAGAAAAGGCAAACCCATGCAGCTGGACAGTCCACACTATAGATTTTTGCTCCCGTGGGATGCGG
GCATGTGACATCATTAGGGCTTTAGTCATAAATCTGGAAAACTCAAGTGCTTGGCTACCAGGATTACCATCATGGACAAA
AAAAAAAGAAGTCGGTATGTCAACATTTTTTTTCTGCAGTCAGAACCTTATATTTGTAACTTTCAGTACAAAGTAAATTC
ATTTTTAGTTTTTTCACTGCACGCTATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis