Browse Element(s) Details


Os.54046.1.S1_at

Description gb:AK103016.1
DB_XREF= gi:32988225
TID=Os.54046.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116M22, full insert sequence.
FL= gb:AK101509.1 gb:AK103016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g022101/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02160NANA5+650291..650665hypothetical protein
LOC_Os05g02170OsAffx.26690.1.S1_at11/115+657944..658240hypothetical protein
LOC_Os05g02180OsAffx.4233.1.S1_at11/115+663461..664713hypothetical protein
LOC_Os05g02190OsAffx.26691.1.S1_at11/115+666008..668371expressed protein
LOC_Os05g02200Os.55575.1.S1_at11/115+668807..66981433 kDa secretory protein, putative, expressed
LOC_Os05g02210Os.54046.1.S1_at1/115+672431..674416pentatricopeptide, putative
LOC_Os05g02220Os.34061.1.S1_a_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02220Os.23458.1.A1_x_at11/115+679625..683350ACT domain-containing protein, putative, expressed
LOC_Os05g02230Os.56983.1.S1_at11/115+684841..685901expressed protein
LOC_Os05g02240Os.54675.1.S1_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02240Os.54675.1.S1_x_at11/115+689591..693936cation/H+ exchanger, putative, expressed
LOC_Os05g02250Os.4876.1.S1_at10/115+694284..696884expressed protein
LOC_Os05g02260Os.5181.1.S1_a_at11/115+697176..699910expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54046.1.S1_at--387--291Chr05:674358..674382 (25 bp)
ATAGTAGGCTTGTCCCTCAGATGAA
LOC_Os05g02210
Os.54046.1.S1_at--520--3871Chr05:674473..674497 (25 bp)
CTGATATTCATCCTCTGGCTAGTAT
NONE
Os.54046.1.S1_at--173--5531Chr05:674523..674547 (25 bp)
GAAAACAGGTCGTCTTCCATGCTCA
NONE
Os.54046.1.S1_at--814--9231Chr05:674538..674562 (25 bp)
TCCATGCTCACTTCTGGGCTACAGA
NONE
Os.54046.1.S1_at--379--5411Chr05:674561..674585 (25 bp)
GAAGCTGCAAGCGTGGCGAGACAAA
NONE
Os.54046.1.S1_at--774--9651Chr05:674642..674666 (25 bp)
TCAGAGCCTGTGTGCTGCTGTTTCA
NONE
Os.54046.1.S1_at--1104--10491Chr05:674663..674687 (25 bp)
TTCACCGCTTGGGTTGGGTAGCTAT
NONE
Os.54046.1.S1_at--979--6951Chr05:674680..674704 (25 bp)
GTAGCTATGTAACCAGACTTTGTTT
NONE
Os.54046.1.S1_at--332--7631Chr05:674706..674730 (25 bp)
GGGACAGCTCTCTTTCTAATGACAT
NONE
Os.54046.1.S1_at--307--2991Chr05:674838..674862 (25 bp)
AATGATATAGACTAGCCCGGCTGAC
NONE
Os.54046.1.S1_at--839--4191Chr05:674853..674877 (25 bp)
CCCGGCTGACAGATATCCAAAGGTT
NONE
Target Sequence 
ATAGTAGGCTTGTCCCTCAGATGAAGGGTTCATCAAGTCTAGGAACTGATTTCTACTGATCAAAATGATTTACTATATGC
TTTAGAGTCAAGCCCAAAAGGCTATCAGTACAATCCTGATATTCATCCTCTGGCTAGTATGGAAAGAAGCAAGGCAAAGG
TGTTCGAAAACAGGTCGTCTTCCATGCTCACTTCTGGGCTACAGAAGCTGCAAGCGTGGCGAGACAAAGTGGCATGGAAG
TTCAAAACTTCTTTGTGAAATATTAGCCTTTGATTTTTTTTTCCTCAGAGCCTGTGTGCTGCTGTTTCACCGCTTGGGTT
GGGTAGCTATGTAACCAGACTTTGTTTGGGGACAGCTCTCTTTCTAATGACATGATATGCAAGTTTTTGCATGTTATCCC
CGCCCTCCCAACACACACACACCCTCCCACCACCCAAAAAAGGTTAAGTAGGTTATCGAGAGTTGATCTGATCATGTAAG
AATGATATAGACTAGCCCGGCTGACAGATATCCAAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis