Browse Element(s) Details


Os.54080.1.S1_at

Description gb:AK101748.1
DB_XREF= gi:32986957
TID=Os.54080.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061P17, full insert sequence.
FL= gb:AK101748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3745011/11Starch binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54080.1.S1_at--81--7631Chr05:21832780..21832804 (25 bp)
GGGACAGTTACTTCTGTTCAAGCTG
LOC_Os05g37450
Os.54080.1.S1_at--606--4831Chr05:21832745..21832769 (25 bp)
GCTACATGAAGCTAACCAACCAGAG
LOC_Os05g37450
Os.54080.1.S1_at--657--10511Chr05:21832113..21832137 (25 bp)
TTCAAGAGGCGCTTCCTGAAACAGC
LOC_Os05g37450
Os.54080.1.S1_at--1114--8491Chr05:21832062..21832086 (25 bp)
TGGCAACGTGCGCTGACGACCGTTA
LOC_Os05g37450
Os.54080.1.S1_at--470--5771Chr05:21832048..21832072 (25 bp)
GACGACCGTTATGCCGAAAGTACAG
LOC_Os05g37450
Os.54080.1.S1_at--622--11Chr05:21831969..21831993 (25 bp)
ATCGGTGGACCGGTGCTTTTGAACA
LOC_Os05g37450
Os.54080.1.S1_at--570--2951Chr05:21831925..21831949 (25 bp)
AAGGCCCTGCAGCAGCTACTCATGA
LOC_Os05g37450
Os.54080.1.S1_at--496--5871Chr05:21831902..21831926 (25 bp)
GAGCCTGGGCTTCAAGATGGATACA
LOC_Os05g37450
Os.54080.1.S1_at--16--6691Chr05:21831822..21831846 (25 bp)
GTTCCTTCCATCGATTTAGTACTAG
LOC_Os05g37450
Os.54080.1.S1_at--746--3711Chr05:21831788..21831812 (25 bp)
CTAGCAGCTGCTGTCTGTTGGTATT
LOC_Os05g37450
Os.54080.1.S1_at--693--8791Chr05:21831700..21831724 (25 bp)
TGTTCTCAGCTAATGAGCAGCCACA
LOC_Os05g37450
Target Sequence 
GGGACAGTTACTTCTGTTCAAGCTGAATTAATGAAGCTACATGAAGCTAACCAACCAGAGTTAATTGTAGATGAACCACA
AATTCAAGAGGCGCTTCCTGAAACAGCGGACACAGAACCAGAGAACGGCGGTGTGGCAACGTGCGCTGACGACCGTTATG
CCGAAAGTACAGATGATGACGGTGTTCCNGTAGGAGGTACAGATGATGACGGTGTTCCAGTAGAAAATCGGTGGACCGGT
GCTTTTGAACATGAGTTGCTTTGGGGTTGGAAGGCCCTGCAGCAGCTACTCATGAGCCTGGGCTTCAAGATGGATACATC
ATGAACGAGTCATAAGGTACTGCAATACATAGGTGGCAATCTTGATGTATTNTGTTCCTTCCATCGATTTAGTACTAGTA
GTAAAGACTAGCAGCTGCTGTCTGTTGGTATTGTTTGAACGTTCAGTTCTGTACATATTATTTCCCAGAACCAAACATCA
ATAAGCTGTCAAGTTTGTTCTCAGCTAATGAGCAGCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis