Browse Element(s) Details


Os.54176.1.S1_at

Description gb:AK102366.1
DB_XREF= gi:32987575
TID=Os.54176.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091K07, full insert sequence.
FL= gb:AK102366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3709011/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54176.1.S1_at--1090--6771Chr11:21392234..21392258 (25 bp)
GTTACCGCATATCATGGCAGATCCA
LOC_Os11g37090
Os.54176.1.S1_at--620--7711Chr11:21392037..21392061 (25 bp)
GGGTGAACTACATAGCTCCTTTGTC
LOC_Os11g37090
Os.54176.1.S1_at--313--7231Chr11:21392015..21392039 (25 bp)
GTCGAAGCTATTAGGCCGCATGCTC
LOC_Os11g37090
Os.54176.1.S1_at--199--9271Chr11:21391992..21392016 (25 bp)
TCCTGCGCTGCAGAACGATGTGTAT
LOC_Os11g37090
Os.54176.1.S1_at--177--1491Chr11:21391930..21391954 (25 bp)
AGCAATACCGACTTGGCATTTTTTA
LOC_Os11g37090
Os.54176.1.S1_at--233--4951Chr11:21391915..21391939 (25 bp)
GCATTTTTTAGCCTGTCATTTGGGT
LOC_Os11g37090
Os.54176.1.S1_at--906--6411Chr11:21391792..21391816 (25 bp)
GATCTTTTTGTCTCAAGGTAGTCTT
LOC_Os11g37090
Os.54176.1.S1_at--49--3451Chr11:21391693..21391717 (25 bp)
CAGTTGTGTTGTTGGATCGGTCATT
LOC_Os11g37090
Os.54176.1.S1_at--522--751Chr11:21391664..21391688 (25 bp)
ATGTAGTACGTCCTGTATCTGCAAA
LOC_Os11g37090
Os.54176.1.S1_at--660--7051Chr11:21391624..21391648 (25 bp)
GTAACATCTTGTAATCACTAGTCTG
LOC_Os11g37090
Os.54176.1.S1_at--1031--6791Chr11:21391572..21391596 (25 bp)
GTTTATATTCCGGTTGTGTCCTTAG
LOC_Os11g37090
Target Sequence 
GTTACCGCATATCATGGCAGATCCATTTGGGAATTTTGTGATTCAAACAGCACTTAAAGAGTGCAAGGGTGAACTACATA
GCTCCTTTGTCGAAGCTATTAGGCCGCATGCTCCTGCGCTGCAGAACGATGTGTATGCGAAAAGGGTTTTATCGAAGACA
TATCTGAAGAACAAGCAATACCGACTTGGCATTTTTTAGCCTGTCATTTGGGTGATTGCAGGAAGGAAGGTGCAAGTTCA
GGCAGCATGTATCAGAACAGGACTTTTAGTGTACAATGGTGTGATAAAGAAAAACAGTTCTTAGAGAAAATGATCTTTTT
GTCTCAAGGTAGTCTTGGCGAAGGAAAGCTTTTGGTTGGACCATTTCAGTATATTTACGTTTGTAGAATTAATATAGCCA
AAATAACTGTCAGTTGTGTTGTTGGATCGGTCATTAATCATGTAGTACGTCCTGTATCTGCAAAAACTGTAGTTTATCAG
TAACATCTTGTAATCACTAGTCTGATCAGATGAGCTGTATCATCTGCAAGGGTTTATATTCCGGTTGTGTCCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis