Browse Element(s) Details


Os.5421.1.S1_at

Description gb:AK067769.1
DB_XREF= gi:32977787
TID=Os.5421.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120J20, full insert sequence.
FL= gb:AK067769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4661011/11ATP-dependent RNA helicase DDX47, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46570OsAffx.25581.1.S1_at11/113+26312309..26313412expressed protein
LOC_Os03g46570Os.49537.1.S1_x_at5/113+26312309..26313412expressed protein
LOC_Os03g46570Os.20627.3.S1_x_at1/113+26312309..26313412expressed protein
LOC_Os03g46590Os.14919.1.S1_at3/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590OsAffx.29313.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46590Os.56216.1.S1_at1/113+26320324..26324849transposon protein, putative, Mutator sub-class
LOC_Os03g46600Os.55587.1.S1_at11/113+26326865..26329081Leucine Rich Repeat family protein, expressed
LOC_Os03g46610Os.53765.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610Os.5421.1.S1_s_at11/113+26329923..26334668ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620Os.38764.1.S1_x_at5/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.10731.1.A1_a_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620Os.45173.1.S1_x_at2/113+26337086..26338310retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46630NANA3+26341863..26343734retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46640Os.8039.1.S1_at11/113+26345472..26346656Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed
LOC_Os03g46650Os.10.1.S1_s_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46650OsAffx.25583.1.S1_at11/113+26347808..26355758Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46660Os.21574.1.S1_a_at11/113+26356927..26359742Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5421.1.S1_at--766--9091Chr03:26329959..26329983 (25 bp)
TGCTCATCTGCTTCCACAAAAGCCG
LOC_Os03g46610
Os.5421.1.S1_at--131--9611Chr03:26329956..26329980 (25 bp)
TCATCTGCTTCCACAAAAGCCGGTG
LOC_Os03g46610
Os.5421.1.S1_at--785--471Chr03:26329954..26329978 (25 bp)
ATCTGCTTCCACAAAAGCCGGTGGC
LOC_Os03g46610
Os.5421.1.S1_at--1001--9471Chr03:26329953..26329977 (25 bp)
TCTGCTTCCACAAAAGCCGGTGGCA
LOC_Os03g46610
Os.5421.1.S1_at--210--3851Chr03:26329952..26329976 (25 bp)
CTGCTTCCACAAAAGCCGGTGGCAT
LOC_Os03g46610
Os.5421.1.S1_at--857--4891Chr03:26329950..26329974 (25 bp)
GCTTCCACAAAAGCCGGTGGCATCA
LOC_Os03g46610
Os.5421.1.S1_at--775--3291Chr03:26329945..26329969 (25 bp)
CACAAAAGCCGGTGGCATCAGGTGA
LOC_Os03g46610
Os.5421.1.S1_at--958--2191Chr03:26329944..26329968 (25 bp)
ACAAAAGCCGGTGGCATCAGGTGAT
LOC_Os03g46610
Os.5421.1.S1_at--646--2431Chr03:26329942..26329966 (25 bp)
AAAAGCCGGTGGCATCAGGTGATCT
LOC_Os03g46610
Os.5421.1.S1_at--769--2351Chr03:26329941..26329965 (25 bp)
AAAGCCGGTGGCATCAGGTGATCTG
LOC_Os03g46610
Os.5421.1.S1_at--614--4491Chr03:26329938..26329962 (25 bp)
GCCGGTGGCATCAGGTGATCTGGAC
LOC_Os03g46610
Target Sequence 
TGCTCATCTGCTTCCACAAAAGCCGGTGGCATCAGGTGATCTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis