Browse Element(s) Details


Os.54382.1.S1_at

Description gb:AK106547.1
DB_XREF= gi:32991756
TID=Os.54382.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F05, full insert sequence.
FL= gb:AK106547.1 gb:AK103792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0112010/11Sulfate transporter family protein, expressed
LOC_Os11g035901/11Nse1 non-SMC component of SMC5-6 complex family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01080Os.46922.1.S1_at10/118+52251..57016expressed protein
LOC_Os08g01090Os.25169.1.S1_at10/118+57228..61492B3 DNA binding domain containing protein, expressed
LOC_Os08g01100Os.5767.1.S1_at11/118+64999..66368HMG box family protein, expressed
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed
LOC_Os08g01150Os.27612.1.S1_at11/118+95885..101033expressed protein
LOC_Os08g01160OsAffx.28969.1.S1_at11/118+102100..102900plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g01170Os.5629.1.S1_at11/118+103146..104028acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54382.1.S1_at--1070--4571Chr08:81378..81402 (25 bp)
GCGCTCAGGGAACGCATCGTCTCAT
LOC_Os08g01120
Os.54382.1.S1_at--98--4971Chr08:81391..81415 (25 bp)
GCATCGTCTCATCTCAAACGGATTT
LOC_Os08g01120
Os.54382.1.S1_at--132--3192Chr11:1391814..1392194 (25 bp)
CAATTCCATTTCACTATCATCTCAA
LOC_Os11g03590
Os.54382.1.S1_at--522--2371Chr08:81449..81473 (25 bp)
AAACGCCAGCCAAACATTCATAAAT
LOC_Os08g01120
Os.54382.1.S1_at--64--9751Chr08:81473..81497 (25 bp)
TAATCACTCAATACAGCTCGTTCCG
LOC_Os08g01120
Os.54382.1.S1_at--89--4811Chr08:81488..81512 (25 bp)
GCTCGTTCCGTATGCTGTCCAGGAA
LOC_Os08g01120
Os.54382.1.S1_at--580--931Chr08:81508..81532 (25 bp)
AGGAACATTCTCAGGTCCCTTGCTT
LOC_Os08g01120
Os.54382.1.S1_at--835--10711Chr08:81527..81937 (25 bp)
TTGCTTTCCTCTCGTGTATCTACAT
NONE
Os.54382.1.S1_at--729--8851Chr08:81562..81586 (25 bp)
TGATGAACCCTTGATCTGTCGCCTA
LOC_Os08g01120
Os.54382.1.S1_at--939--5331Chr08:81601..81625 (25 bp)
GAAGATAGGTCGATGGTGGTTCCAT
LOC_Os08g01120
Os.54382.1.S1_at--188--8631Chr08:81614..81638 (25 bp)
TGGTGGTTCCATGGCCGACCGATGC
LOC_Os08g01120
Target Sequence 
GCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAG
CCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCGTATGCTGTCCAGGAACATTCTCAGGTCCCTTGCTTTCCTC
TCGTGTATCTACATCATCATCATCGTGATGAACCCTTGATCTGTCGCCTATGGCCGGCGACGGAGGAAGATAGGTCGATG
GTGGTTCCATGGCCGACCGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis