Browse Element(s) Details


Os.54405.1.S1_at

Description gb:AK105004.2
DB_XREF= gi:42821619
TID=Os.54405.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-B03, full insert sequence.
FL= gb:AK105004.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g021302/11RNA recognition motif family protein, expressed
LOC_Os03g056302/11expressed protein
LOC_Os05g066001/11hypothetical protein
LOC_Os01g046101/11hypothetical protein
LOC_Os03g283601/11hypothetical protein
LOC_Os01g259901/11esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os02g138501/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0008152biological_processmetabolism
GO:0003723molecular_functionRNA binding
GO:0003824molecular_functioncatalytic activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0008415molecular_functionacyltransferase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54405.1.S1_at--704--8731Chr11:7141536..7141560 (25 bp)
ATGGCGCTGAATGTACGTTGGCACG
NONE
Os.54405.1.S1_at--510--99325Chr08:25751610..25751634 (25 bp)
TACGTTGGCACGCTGACTTAGTCTC
NONE
Os.54405.1.S1_at--853--19169Chr12:4301985..4302009 (25 bp)
ACGTGGCGCTGAGGTGTCTAAGTTC
NONE
Os.54405.1.S1_at--1144--9771Chr01:594209..594233 (25 bp)
TAAGTTCCGCGCCACATGATTTAGC
NONE
Os.54405.1.S1_at--757--67929Chr11:7530015..7530039 (25 bp)
GTTTTGGCAGCGGTTCATTTGTAAA
NONE
Os.54405.1.S1_at--788--7291Chr01:594323..594347 (25 bp)
GTGCGACACAAACACACTCACAAGA
NONE
Os.54405.1.S1_at--839--5071Chr01:594378..594402 (25 bp)
GCACGGTTTCTCACCTGGATTTGTG
NONE
Os.54405.1.S1_at--722--7271Chr01:594400..594424 (25 bp)
GTGCCATTTGGTTGTACTTGTACAG
NONE
Os.54405.1.S1_at--1038--2171Chr01:594508..594532 (25 bp)
ACACTTGTATTCCTGACCTGTTTCT
NONE
Os.54405.1.S1_at--720--5831Chr01:594522..594546 (25 bp)
GACCTGTTTCTTGTCTAGCACAGTA
NONE
Os.54405.1.S1_at--871--2731Chr01:594552..594576 (25 bp)
AAGAATTCAGTAACCTCAGTTGATG
NONE
Target Sequence 
ATGGCGCTGAATGTACGTTGGCACGCTGACTTAGTCTCCCATCCGCCGTGGCACGGCATTCAGCGCCAGCTGACGTGGCG
CTGAGGTGTCTAAGTTCCGCGCCACATGATTTAGCGTTGAGCAAAAAGGTCAGATTTGAAATAAGTTTTGGCAGCGGTTC
ATTTGTAAAATTAGTTTTTACAAAGGGTTAAATTGTCAAAATTTGTGCGACACAAACACACTCACAAGAAGACATGAACA
TCAAGTGAAGCAGGGAGGGGCACGGTTTCTCACCTGGATTTGTGCCATTTGGTTGTACTTGTACAGAGATGATCTATGTT
GTTGGATTGACAGACACCAAGGAACACATGTAGTAGTAAATGATTTTTGTTTTACTTTGTCAAAGTTTTACACTTGTATT
CCTGACCTGTTTCTTGTCTAGCACAGTAGTGTTAAGAATTCAGTAACCTCAGTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis