Browse Element(s) Details

Os.54410.1.S1_at

Description

gb:AK105105.1
DB_XREF= gi:32990314
TID=Os.54410.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E08, full insert sequence.
FL= gb:AK105105.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13720	11/11	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13660	Os.27835.1.S1_at	11/11	6	+	7574001..7580552	Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670	Os.50197.1.S1_at	10/11	6	+	7583781..7589606	Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680	Os.8239.1.S1_at	11/11	6	+	7590593..7592328	senescence-associated protein, putative, expressed
LOC_Os06g13690	Os.27160.1.A1_at	3/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13690	Os.25513.1.S1_at	1/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13700	OsAffx.31590.1.S1_at	9/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13700	OsAffx.11302.2.S1_at	1/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13710	OsAffx.28184.1.S1_x_at	11/11	6	+	7599957..7600523	glycosyltransferase, putative
LOC_Os06g13720	Os.54410.1.S1_at	11/11	6	+	7601365..7604690	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730	Os.55225.1.S1_at	10/11	6	+	7606109..7606940	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13760	OsAffx.27621.1.S1_s_at	11/11	6	+	7628758..7630268	glycosyl transferase family 8 protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0005739	cellular_component	mitochondrion
GO:0003863	molecular_function	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54410.1.S1_at--954--785	1	Chr06:7603073..7603097 (25 bp)	GGTATGGATGTTCTTGCAGTCAAAC	LOC_Os06g13720
Os.54410.1.S1_at--1158--621	1	Chr06:7603358..7603382 (25 bp)	GATGGACACCTACAGATACCACGGA	LOC_Os06g13720
Os.54410.1.S1_at--455--649	1	Chr06:7603372..7603396 (25 bp)	GATACCACGGACACTCTATGTCAGA	LOC_Os06g13720
Os.54410.1.S1_at--839--711	1	Chr06:7603391..7603415 (25 bp)	GTCAGATCCAGGGAGCACTTACCGC	LOC_Os06g13720
Os.54410.1.S1_at--694--787	1	Chr06:7603574..7603598 (25 bp)	GGTTAGGAAGCTACTACTGGCCCAT	LOC_Os06g13720
Os.54410.1.S1_at--67--95	1	Chr06:7603878..7603902 (25 bp)	AGGAAGCAAGTCGACACTGCCATCG	LOC_Os06g13720
Os.54410.1.S1_at--1107--291	1	Chr06:7604001..7604024 (24 bp)	AAGGAAAGTCCAATGCCCGATCCAT	LOC_Os06g13720
Os.54410.1.S1_at--169--597	1	Chr06:7604501..7604525 (25 bp)	GAGAACTGTACTTCCCTAGGGTAGC	LOC_Os06g13720
Os.54410.1.S1_at--727--341	1	Chr06:7604536..7604560 (25 bp)	CAGAATCTTGGCTGCCTTGTGCTGT	LOC_Os06g13720
Os.54410.1.S1_at--99--677	1	Chr06:7604616..7604640 (25 bp)	GTTAATCTTCCTTTTTCTGTCACTA	LOC_Os06g13720
Os.54410.1.S1_at--644--1069	1	Chr06:7604667..7604690 (24 bp)	TTGCCGGAATTAATCCTGTCATTTC	LOC_Os06g13720

Target Sequence

GGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGCAACATGCTCTTGAAAATGGACCGATTATTCTTGA
GATGGACACCTACAGATACCACGGACACTCTATGTCAGATCCAGGGAGCACTTACCGCACCAGAGATGAAATTGCAGGCA
TAAGACAGGAGCGCGATCCAATTGAAAGGGTTAGGAAGCTACTACTGGCCCATGACTTTGCAACCACACAAGAACTCAAG
GACATGGAGAAAGAAATAAGGAAGCAAGTCGACACTGCCATCGCGAAAGCAAAGGAAAGTCCAATGCCCGATCCATCTGA
GCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGTCATTTGGTGTGGACAGGAAGGTGGTGAGAACTGTACTTC
CCTAGGGTAGCCGACGGCCACCAGAATCTTGGCTGCCTTGTGCTGTAGTTACATATACAAGAGGAGAAATAATTAATAAT
ACAGGTCAAGGCATCCTTAGTGTTAATCTTCCTTTTTCTGTCACTAAATAAATTATGTATAGGTGAATCAATTGCCGGAA
TTAATCCTGTCATTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis