Browse Element(s) Details


Os.54470.1.S1_at

Description gb:AK105253.1
DB_XREF= gi:32990462
TID=Os.54470.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D05, full insert sequence.
FL= gb:AK105253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5518011/11alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54470.1.S1_at--1026--1291Chr04:32588012..32588036 (25 bp)
AGATGCTCTACGTAATGCCCACTTC
LOC_Os04g55180
Os.54470.1.S1_at--177--2171Chr04:32587984..32588008 (25 bp)
ACACCTCCTTGATTCCGAACTCGTA
LOC_Os04g55180
Os.54470.1.S1_at--772--9251Chr04:32587971..32587995 (25 bp)
TCCGAACTCGTATCATTGTTGACCA
LOC_Os04g55180
Os.54470.1.S1_at--579--8811Chr04:32587955..32587979 (25 bp)
TGTTGACCATTTCTAGTATGCTGTA
LOC_Os04g55180
Os.54470.1.S1_at--814--6911Chr04:32587940..32587964 (25 bp)
GTATGCTGTAAAGTAATCTCGACGC
LOC_Os04g55180
Os.54470.1.S1_at--1035--9751Chr04:32587927..32587951 (25 bp)
TAATCTCGACGCGTGCAGAGGATCG
LOC_Os04g55180
Os.54470.1.S1_at--1076--5011Chr04:32587785..32587809 (25 bp)
GCAGTGATCACTGAACGTTAGTAAA
LOC_Os04g55180
Os.54470.1.S1_at--120--4051Chr04:32587759..32587783 (25 bp)
CGTTGTATGCACGTTGATCCAGTGA
LOC_Os04g55180
Os.54470.1.S1_at--1140--6491Chr04:32587646..32587670 (25 bp)
GATAGTGGATTTTGTCAGACCTTTG
LOC_Os04g55180
Os.54470.1.S1_at--927--7091Chr04:32587633..32587657 (25 bp)
GTCAGACCTTTGTGTATTTCAGTAA
LOC_Os04g55180
Os.54470.1.S1_at--1127--211Chr04:32587609..32587633 (25 bp)
ATATTGATTTCTCCTACAGTAGTAC
LOC_Os04g55180
Target Sequence 
AGATGCTCTACGTAATGCCCACTTCGCCACACCTCCTTGATTCCGAACTCGTATCATTGTTGACCATTTCTAGTATGCTG
TAAAGTAATCTCGACGCGTGCAGAGGATCGAGGACAAGGGGAGGGAGTTCGGCTCAAGAGTGAAATCAGGAAAGCTGCGG
TGGTTTGTGAGGGAAACAGGTACTGTTTCTTCATTTCTGTGTTGGTTAGATGAAAGATGATCTTATTGCAGTGATCACTG
AACGTTAGTAAAACGTTGTATGCACGTTGATCCAGTGAAATGGGGTGTGTACTGACGACGAAGCAGTATTGCATTGTGAA
TACAAATTTAGTATTTAAGAATAAAAACGAATGATACTTTCACTAAGATAGTGGATTTTGTCAGACCTTTGTGTATTTCA
GTAATATTGATTTCTCCTACAGTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis