Browse Element(s) Details


Os.54560.1.S1_at

Description gb:AK105715.1
DB_XREF= gi:32990924
TID=Os.54560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F03, full insert sequence.
FL= gb:AK105715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0113011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54560.1.S1_at--781--9372Chr02:18062330..18062354 (25 bp)
TCGAGCTGCACGGTTTGGTGGACCA
NONE
Os.54560.1.S1_at--397--1612Chr02:18062333..18062357 (25 bp)
AGCTGCACGGTTTGGTGGACCATGA
NONE
Os.54560.1.S1_at--762--5091Chr02:73651..73675 (25 bp)
GCACGGTTTGGTGGACCATGATGTA
LOC_Os02g01130
Os.54560.1.S1_at--356--8631Chr02:73643..73667 (25 bp)
TGGTGGACCATGATGTAGCGCAGCT
LOC_Os02g01130
Os.54560.1.S1_at--393--8531Chr02:73640..73664 (25 bp)
TGGACCATGATGTAGCGCAGCTCCT
LOC_Os02g01130
Os.54560.1.S1_at--472--711Chr02:73634..73658 (25 bp)
ATGATGTAGCGCAGCTCCTCATCGA
LOC_Os02g01130
Os.54560.1.S1_at--559--751Chr02:73631..73655 (25 bp)
ATGTAGCGCAGCTCCTCATCGAGAA
LOC_Os02g01130
Os.54560.1.S1_at--1117--3531Chr02:73615..73639 (25 bp)
CATCGAGAAGCACCATGGCGAGCTG
LOC_Os02g01130
Os.54560.1.S1_at--755--9371Chr02:73613..73637 (25 bp)
TCGAGAAGCACCATGGCGAGCTGCA
LOC_Os02g01130
Os.54560.1.S1_at--160--9391Chr02:73496..73520 (25 bp)
TCTGAGCTAAGCCATGGCAAGAAAG
LOC_Os02g01130
Os.54560.1.S1_at--1022--9791Chr02:73489..73513 (25 bp)
TAAGCCATGGCAAGAAAGGCACGAG
LOC_Os02g01130
Target Sequence 
TCGAGCTGCACGGTTTGGTGGACCATGATGTAGCGCAGCTCCTCATCGAGAAGCACCATGGCGAGCTGCACGGCGACCCC
GGTGGAGGAGGAGGACTCCGCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCGCGCGAGGAGCTCGACGGCCGGTGCTT
TCTCTGAGCTAAGCCATGGCAAGAAAGGCACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis