Browse Element(s) Details

Os.54615.1.S1_at

Description

gb:AK106250.1
DB_XREF= gi:32991459
TID=Os.54615.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E02, full insert sequence.
FL= gb:AK106250.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g18140	11/11	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g03914	1/11	Metal tolerance protein C3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g18080	NA	NA	6	+	10527665..10528955	hypothetical protein
LOC_Os06g18090	Os.46715.1.S1_x_at	2/11	6	+	10532632..10534947	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18090	OsAffx.447.1.S1_at	1/11	6	+	10532632..10534947	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18090	Os.46715.1.S1_at	1/11	6	+	10532632..10534947	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18100	OsAffx.447.1.S1_at	1/11	6	+	10538046..10540237	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18100	OsAffx.22947.2.S1_x_at	1/11	6	+	10538046..10540237	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18110	OsAffx.19407.1.S1_at	2/11	6	+	10542384..10547054	transposon protein, putative, Mutator sub-class
LOC_Os06g18120	OsAffx.4868.1.S1_at	10/11	6	+	10548899..10549900	expressed protein
LOC_Os06g18130	NA	NA	6	+	10550639..10551443	retrotransposon protein, putative, LINE subclass
LOC_Os06g18140	Os.54615.1.S1_at	11/11	6	+	10552310..10554042	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g18140	Os.5606.1.S1_at	1/11	6	+	10552310..10554042	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g18150	Os.54124.1.S1_at	3/11	6	+	10560048..10562820	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18150	Os.51348.1.S1_x_at	2/11	6	+	10560048..10562820	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18160	NA	NA	6	+	10564255..10565182	hypothetical protein
LOC_Os06g18164	Os.46986.1.S1_at	1/11	6	+	10574292..10580520	hypothetical protein
LOC_Os06g18164	Os.2741.4.S1_x_at	1/11	6	+	10574292..10580520	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006805	biological_process	xenobiotic metabolism
GO:0006812	biological_process	cation transport
GO:0009636	biological_process	response to toxin
GO:0009808	biological_process	lignin metabolism
GO:0042178	biological_process	xenobiotic catabolism
GO:0016020	cellular_component	membrane
GO:0008194	molecular_function	UDP-glycosyltransferase activity
GO:0008324	molecular_function	cation transporter activity
GO:0015562	molecular_function	efflux permease activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0035251	molecular_function	UDP-glucosyltransferase activity
GO:0047209	molecular_function	coniferyl-alcohol glucosyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54615.1.S1_at--366--929	1	Chr06:10553474..10553498 (25 bp)	TCCGTCGGTCTGTTCATCAGCCACT	LOC_Os06g18140
Os.54615.1.S1_at--1149--191	1	Chr06:10553803..10553827 (25 bp)	ACGGTGCCGTGATGGGCTTGTCATC	LOC_Os06g18140
Os.54615.1.S1_at--974--79	1	Chr06:10553814..10553838 (25 bp)	ATGGGCTTGTCATCACGAACGGAAT	LOC_Os06g18140
Os.54615.1.S1_at--983--527	1	Chr06:10553862..10553886 (25 bp)	GAATGGGCAAACGTCCAAACGAAAT	LOC_Os06g18140
Os.54615.1.S1_at--955--825	1	Chr06:10553887..10553911 (25 bp)	GGCAGCATCTTCAAGCATTGTCAGT	LOC_Os06g18140
Os.54615.1.S1_at--280--5	1	Chr06:10553903..10553927 (25 bp)	ATTGTCAGTCAGTCACCACAGTCCA	LOC_Os06g18140
Os.54615.1.S1_at--1153--113	1	Chr06:10553922..10553946 (25 bp)	AGTCCACAGGTGGTAGGCTCACATC	LOC_Os06g18140
Os.54615.1.S1_at--1007--831	1	Chr06:10553937..10553961 (25 bp)	GGCTCACATCATAAAAAACCTTTTT	LOC_Os06g18140
Os.54615.1.S1_at--965--235	1	Chr06:10553952..10553976 (25 bp)	AAACCTTTTTGTTCCATGATAAGCA	LOC_Os06g18140
Os.54615.1.S1_at--935--511	1	Chr06:10553974..10553998 (25 bp)	GCACACATGCACGAGATGTCACCAA	LOC_Os06g18140
Os.54615.1.S1_at--716--627	2	Chr06:10553988..10554012 (25 bp)	GATGTCACCAACAATTTCAACCAAA	LOC_Os06g18140

Target Sequence

TCCGTCGGTCTGTTCATCAGCCACTGCGGGTGGAGCTCGGTGACGGAGGCGGCGGCGAGCGGCGTGCCGGTGGTGGCGTG
GCCGAGGTTCGCCGACCAGCGGGTGAACGCCGGCGTGGTGGCGCGCGCGGGGATCGGCGTGTGGGTGGACACCTGGAGCT
GGGAGGGGGAGGATGATGGGGTGGTGAGCGCGGAGGACATCGCCGGGAAGGTGAGGTCGGCGATGGCCGACGAGGGTGTA
AGGAAGGCGGCGGCGAGCGTCCGTGAGGCCGCGGCGAGGGCGGTGGCCGCCGGAGGGAGCAGCTACCGGAGCTTGGCGGA
GTTGGTGCGACGGTGCCGTGATGGGCTTGTCATCACGAACGGAATGTGAGAGAAGCGAGGAGAAGACGGAATGGGCAAAC
GTCCAAACGAAATGGCAGCATCTTCAAGCATTGTCAGTCAGTCACCACAGTCCACAGGTGGTAGGCTCACATCATAAAAA
ACCTTTTTGTTCCATGATAAGCACACATGCACGAGATGTCACCAACAATTTCAACCAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis