Browse Element(s) Details

OsAffx.4868.1.S1_at

Description

tigr:9634.m01802
TID=OsAffx.4868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g18120	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g18070	NA	NA	6	+	10522965..10525415	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18080	NA	NA	6	+	10527665..10528955	hypothetical protein
LOC_Os06g18090	Os.46715.1.S1_x_at	2/11	6	+	10532632..10534947	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18090	OsAffx.447.1.S1_at	1/11	6	+	10532632..10534947	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18090	Os.46715.1.S1_at	1/11	6	+	10532632..10534947	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18100	OsAffx.447.1.S1_at	1/11	6	+	10538046..10540237	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18100	OsAffx.22947.2.S1_x_at	1/11	6	+	10538046..10540237	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18110	OsAffx.19407.1.S1_at	2/11	6	+	10542384..10547054	transposon protein, putative, Mutator sub-class
LOC_Os06g18120	OsAffx.4868.1.S1_at	10/11	6	+	10548899..10549900	expressed protein
LOC_Os06g18130	NA	NA	6	+	10550639..10551443	retrotransposon protein, putative, LINE subclass
LOC_Os06g18140	Os.54615.1.S1_at	11/11	6	+	10552310..10554042	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g18140	Os.5606.1.S1_at	1/11	6	+	10552310..10554042	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g18150	Os.54124.1.S1_at	3/11	6	+	10560048..10562820	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18150	Os.51348.1.S1_x_at	2/11	6	+	10560048..10562820	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18160	NA	NA	6	+	10564255..10565182	hypothetical protein
LOC_Os06g18164	Os.46986.1.S1_at	1/11	6	+	10574292..10580520	hypothetical protein
LOC_Os06g18164	Os.2741.4.S1_x_at	1/11	6	+	10574292..10580520	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4868.1.S1_at--639--259	1	Chr06:10548997..10549021 (25 bp)	AACGACGACGGCTAACCTCGGCGAG	LOC_Os06g18120
OsAffx.4868.1.S1_at--94--409	1	Chr06:10549113..10549137 (25 bp)	CGAGCTCATGGGAGGCAGATCCGTC	LOC_Os06g18120
OsAffx.4868.1.S1_at--1115--723	1	Chr06:10549135..10549159 (25 bp)	GTCGCCGGCAAGCTTGTGGGAGGTG	LOC_Os06g18120
OsAffx.4868.1.S1_at--1128--591	1	Chr06:10549226..10549250 (25 bp)	GAGCTTAGGGCTGGCCGATCCATCA	LOC_Os06g18120
OsAffx.4868.1.S1_at--38--1045	1	Chr06:10549230..10549254 (25 bp)	TTAGGGCTGGCCGATCCATCACTTG	LOC_Os06g18120
OsAffx.4868.1.S1_at--507--433	1	Chr06:10549245..10549269 (25 bp)	CCATCACTTGCAAGCTCGAGGGAGG	LOC_Os06g18120
OsAffx.4868.1.S1_at--686--779	1	Chr06:10549272..10549776 (25 bp)	GGTCCATCGCCGACAACGAATTGCG	LOC_Os06g18120
OsAffx.4868.1.S1_at--657--421	1	NONE	CCGACAACGAATTGCGGCAAGGCAT	NONE
OsAffx.4868.1.S1_at--845--293	1	Chr06:10549779..10549803 (25 bp)	AAGGCATGGCGCATGCCCTCGATGT	LOC_Os06g18120
OsAffx.4868.1.S1_at--1058--337	1	Chr06:10549817..10549841 (25 bp)	CAGCCGTCCATAAGCCCGATTTCTG	LOC_Os06g18120
OsAffx.4868.1.S1_at--512--179	1	Chr06:10549845..10549869 (25 bp)	ACCGCCATGGCCACGTTGGTCGGCT	LOC_Os06g18120

Target Sequence

AACGACGACGGCTAACCTCGGCGAGCTCGGGGGAGCCATGGCCGAAGAGCTCAGGGGAGATGGATCTGTCGCTGGCAGGC
TCGGGCGGGCTTCGAGGGAGATGGATCTGTCGCTGGCGAGCTCATGGGAGGCAGATCCGTCGCCGGCAAGCTTGTGGGAG
GTGGATCCATCGCCGACAGGCTCGGGGGAGGTTGATCCGTCGCTGGAGATATTGGGGGACGTCACCGGCGAGCTTAGGGC
TGGCCGATCCATCACTTGCAAGCTCGAGGGAGGGCGGTCCATCGCCGACAACGAATTGCGGCAAGGCATGGCGCATGCCC
TCGATGTCGCACTCTCCCGGCAGCCGTCCATAAGCCCGATTTCTGCTCACCGCCATGGCCACGTTGGTCGGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis