Browse Element(s) Details


Os.54633.1.S1_at

Description gb:AK106318.1
DB_XREF= gi:32991527
TID=Os.54633.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E03, full insert sequence.
FL= gb:AK106318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4065011/11cation/hydrogen exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40600OsAffx.29313.1.S1_at1/115+23730552..23732837Transposable element protein, putative, MuDR
LOC_Os05g40610OsAffx.27260.3.S1_x_at11/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.2.S1_x_at5/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.4.S1_x_at1/115+23735051..23736225F-box domain containing protein
LOC_Os05g40620Os.57244.1.S1_at11/115+23737175..23738886expressed protein
LOC_Os05g40630Os.10422.1.S1_at11/115+23742490..23743418expressed protein
LOC_Os05g40640Os.9332.2.S1_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40640Os.9332.2.S1_x_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed
LOC_Os05g40660Os.38751.1.A1_at5/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.1198.1.S1_at2/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.8338.1.S1_x_at1/115+23761324..23766044hypothetical protein
LOC_Os05g40670OsAffx.29607.5.S1_x_at9/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670OsAffx.29607.3.S1_x_at6/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670Os.37083.2.S1_at1/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40680OsAffx.29607.1.S1_x_at8/115+23769647..23773964hypothetical protein
LOC_Os05g40680OsAffx.29607.2.S1_s_at5/115+23769647..23773964hypothetical protein
LOC_Os05g40690OsAffx.15048.1.S1_at10/115+23776180..23778569hypothetical protein
LOC_Os05g40690OsAffx.29536.4.S1_x_at2/115+23776180..23778569hypothetical protein
LOC_Os05g40700Os.33019.1.S1_at11/115+23782547..23786320expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54633.1.S1_at--1142--7972Chr05:23756599..23756623 (25 bp)
GGATGACCCCGTCCGGCAGTATTTG
LOC_Os05g40650
Os.54633.1.S1_at--78--9771Chr05:23756433..23756457 (25 bp)
TAATCGCTCGATTGGTAGTAGTAGG
LOC_Os05g40650
Os.54633.1.S1_at--318--8811Chr05:23756418..23756442 (25 bp)
TAGTAGTAGGGTTTCGAAGCTTAAT
LOC_Os05g40650
Os.54633.1.S1_at--825--6991Chr05:23756347..23756371 (25 bp)
GTACGGAGTACAATTCTAGGTGATT
LOC_Os05g40650
Os.54633.1.S1_at--763--7411Chr05:23756328..23756352 (25 bp)
GTGATTGTTTTTGTAGATGTCGTGT
LOC_Os05g40650
Os.54633.1.S1_at--91--6271Chr05:23756313..23756337 (25 bp)
GATGTCGTGTTTAATTGGTCAGATT
LOC_Os05g40650
Os.54633.1.S1_at--510--8591Chr05:23756298..23756322 (25 bp)
TGGTCAGATTCTGTGATCGATCCCT
LOC_Os05g40650
Os.54633.1.S1_at--669--511Chr05:23756283..23756307 (25 bp)
ATCGATCCCTCCTGTAGTGTGAGAG
LOC_Os05g40650
Os.54633.1.S1_at--816--1331Chr05:23756262..23756286 (25 bp)
AGAGGTGATCGATTACATGTACTAC
LOC_Os05g40650
Os.54633.1.S1_at--425--6951Chr05:23756245..23756269 (25 bp)
TGTACTACTACGTGTTTTAACTCTT
LOC_Os05g40650
Os.54633.1.S1_at--79--9791Chr05:23756228..23756252 (25 bp)
TAACTCTTCTAGGTTCTTAACTAAT
LOC_Os05g40650
Target Sequence 
GGATGACCCCGTCCGGCAGTATTTGACCAACGCCAACCAGCGGCCGTCGGTGGCGATCGGCGGCAACCAGATGGGCGCCG
CCGGCCGAGGCGGATGGAGCGGCGGCGCCGGCGGGTACTGACCGGACTCCGATCCGATCGAGCGCTTCGCTGTAATCGCC
GTCAGTTAATCGCTCGATTGGTAGTAGTAGGGTTTCGAAGCTTAATTATTTTTAGGAATTAATTATGATTGTTAATTAAT
TTTTGTTGTGTAGTACGGAGTACAATTCTAGGTGATTGTTTTTGTAGATGTCGTGTTTAATTGGTCAGATTCTGTGATCG
ATCCCTCCTGTAGTGTGAGAGGTGATCGATTACATGTACTACTACGTGTTTTAACTCTTCTAGGTTCTTAACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis