Browse Element(s) Details


Os.54708.1.S1_at

Description gb:AK106538.1
DB_XREF= gi:32991747
TID=Os.54708.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C10, full insert sequence.
FL= gb:AK106538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0518011/11GH3 auxin-responsive promoter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010252biological_processauxin homeostasis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54708.1.S1_at--439--3191Chr05:2501221..2501245 (25 bp)
CAATCCTCCGTGGTGTGCAGCAGCA
LOC_Os05g05180
Os.54708.1.S1_at--570--2031Chr05:2501172..2501196 (25 bp)
ACTAGCATCTGTCTCATTGTGTCAC
LOC_Os05g05180
Os.54708.1.S1_at--239--3611Chr05:2501158..2501182 (25 bp)
CATTGTGTCACTGAACCAGCGGCAG
LOC_Os05g05180
Os.54708.1.S1_at--712--1711Chr05:2501144..2501168 (25 bp)
ACCAGCGGCAGTTTCTTGATCGTGA
LOC_Os05g05180
Os.54708.1.S1_at--557--10751Chr05:2501129..2501153 (25 bp)
TTGATCGTGAGTCCAATTCCGGCAC
LOC_Os05g05180
Os.54708.1.S1_at--823--3151Chr05:2501115..2501139 (25 bp)
AATTCCGGCACTGACAAGGTGTTCA
LOC_Os05g05180
Os.54708.1.S1_at--342--2231Chr05:2501102..2501126 (25 bp)
ACAAGGTGTTCATCTCCGATTCGAT
LOC_Os05g05180
Os.54708.1.S1_at--829--3451Chr05:2501050..2501074 (25 bp)
CAGTCTCCGATTCGATCTACAAGAA
LOC_Os05g05180
Os.54708.1.S1_at--1071--5351Chr05:2501028..2501052 (25 bp)
GAAGAATCCCTCACCCTTTATAAGG
LOC_Os05g05180
Os.54708.1.S1_at--410--1071Chr05:2500989..2501013 (25 bp)
AGGGAATCGTCGGTCGGTTGCTCTC
LOC_Os05g05180
Os.54708.1.S1_at--71--6871Chr05:2500964..2500988 (25 bp)
GTTTGGTCAGCGCTGATTTCAGAAA
LOC_Os05g05180
Target Sequence 
CAATCCTCCGTGGTGTGCAGCAGCAGCTCAATCACTGAACCAGCTGCTCACTAGCATCTGTCTCATTGTGTCACTGAACC
AGCGGCAGTTTCTTGATCGTGAGTCCAATTCCGGCACTGACAAGGTGTTCATCTCCGATTCGATTCTGAATTTTCAGCAC
TGGGGAGGTTTCAGTCTCCGATTCGATCTACAAGAAGAATCCCTCACCCTTTATAAGGATCACCCAAGCTAGAGGGAATC
GTCGGTCGGTTGCTCTCGTTTGGTCAGCGCTGATTTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis