Browse Element(s) Details


Os.54759.1.S1_at

Description gb:AK106696.1
DB_XREF= gi:32991905
TID=Os.54759.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D06, full insert sequence.
FL= gb:AK106696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3540010/11Luminal binding protein 5 precursor, putative, expressed
LOC_Os08g097702/11Luminal binding protein 5 precursor, putative
LOC_Os05g304801/11Luminal binding protein 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35380NANA5+20923504..20926508universal stress protein family protein, expressed
LOC_Os05g35390OsAffx.22848.4.S1_at2/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.4.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.3.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35400Os.54759.1.S1_at10/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35400OsAffx.24785.1.S1_x_at1/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54759.1.S1_at--372--753Chr06:16397624..16397650 (25 bp)
ATGTCGGCGGTGTACCAGAGGTCCG
NONE
Os.54759.1.S1_at--43--3932Chr08:5639449..5639473 (25 bp)
CGGCGCACCGGAAGATGGCAACGTC
LOC_Os08g09770
Os.54759.1.S1_at--970--1752Chr08:5639443..5639467 (25 bp)
ACCGGAAGATGGCAACGTCGACGAC
LOC_Os08g09770
Os.54759.1.S1_at--688--7972Chr08:5639416..5639440 (25 bp)
GGATGACCACGATGAGCTTTAGTTT
NONE
Os.54759.1.S1_at--509--4871Chr05:20950741..20950765 (25 bp)
GCTTTAGTTTAGTCCGGCTGGCGGC
LOC_Os05g35400
Os.54759.1.S1_at--690--3931Chr05:20950727..20950751 (25 bp)
CGGCTGGCGGCTGCTAAGCTAGCTA
LOC_Os05g35400
Os.54759.1.S1_at--933--9971Chr05:20950708..20950732 (25 bp)
TAGCTAGCTCCTGTTTCACTAACTA
LOC_Os05g35400
Os.54759.1.S1_at--734--1592Chr08:5639375..5639394 (20 bp)
AGCTCCTGTTTCACTAACTATCTAG
NONE
Os.54759.1.S1_at--60--9671Chr05:20950693..20950717 (25 bp)
TCACTAACTATCTAGAGTTCCTTTT
LOC_Os05g35400
Os.54759.1.S1_at--1093--2071Chr05:20950595..20950619 (25 bp)
ACATTCATAGTTTGGATTCGATCGA
LOC_Os05g35400
Os.54759.1.S1_at--274--8571Chr05:20950583..20950607 (25 bp)
TGGATTCGATCGAAAGTGTGTTTTC
NONE
Target Sequence 
ATGTCGGCGGTGTACCAGAGGTCCGGCGGCGGCGGCGGCGCACCGGAAGATGGCAACGTCGACGACGAGGATGACCACGA
TGAGCTTTAGTTTAGTCCGGCTGGCGGCTGCTAAGCTAGCTAGCTCCTGTTTCACTAACTATCTAGAGTTCCTTTTTTTT
TTCATTGCCGTATAAAATAATTTTACTAGGCAAACAATTATATTGCAAATATATTAGTATTTTTGTATTACATTCATAGT
TTGGATTCGATCGAAAGTGTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis