Browse Element(s) Details


Os.54821.1.S1_at

Description gb:AK106835.1
DB_XREF= gi:32992044
TID=Os.54821.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G06, full insert sequence.
FL= gb:AK106835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1067011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10649Os.23567.2.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10649Os.23567.1.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10670Os.54821.1.S1_at11/118+6274879..6280325Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein
LOC_Os08g10690NANA8+6291160..6291399hypothetical protein
LOC_Os08g10700NANA8+6292639..6292896hypothetical protein
LOC_Os08g10710OsAffx.30226.4.S1_at4/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.4.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.24587.1.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_x_at2/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.19052.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_x_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_s_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54821.1.S1_at--1038--5831Chr08:6275376..6275400 (25 bp)
GACCTCTTTGCACGATGATCTGATC
LOC_Os08g10670
Os.54821.1.S1_at--588--6231Chr08:6275299..6275323 (25 bp)
GATGGCCCAAGCACTGTTATAAACG
LOC_Os08g10670
Os.54821.1.S1_at--1059--5671Chr08:6275255..6275279 (25 bp)
GACATTACCGTCACACTTAGTTTTG
LOC_Os08g10670
Os.54821.1.S1_at--356--6511Chr08:6275219..6275243 (25 bp)
GATATAGAACTCTTCACATCCGCAC
LOC_Os08g10670
Os.54821.1.S1_at--269--2431Chr08:6275172..6275196 (25 bp)
AAAAGGACCTGCTGTCTGCTTAGCG
LOC_Os08g10670
Os.54821.1.S1_at--1066--3171Chr08:6275119..6275143 (25 bp)
CAATCCTAGGTATGTTTGCCCAGAC
LOC_Os08g10670
Os.54821.1.S1_at--566--6851Chr08:6275106..6275130 (25 bp)
GTTTGCCCAGACCAACATCAATGTT
LOC_Os08g10670
Os.54821.1.S1_at--241--6491Chr08:6275058..6275082 (25 bp)
GATAGCCATGGATCCGATTCGTTGT
LOC_Os08g10670
Os.54821.1.S1_at--662--6751Chr08:6274940..6274964 (25 bp)
GTTACCAATTTGCATCTTCACGGCT
LOC_Os08g10670
Os.54821.1.S1_at--171--9571Chr08:6274926..6274950 (25 bp)
TCTTCACGGCTGTCTTAGTTTACTA
LOC_Os08g10670
Os.54821.1.S1_at--1057--2291Chr08:6274888..6274912 (25 bp)
AAATGGACCTGCTACTTCGTTGAGT
LOC_Os08g10670
Target Sequence 
GACCTCTTTGCACGATGATCTGATCAAAGAAATGGAGGCAATAATTAAGTCAGAAAATATTATGGAAGGGGCCACTAGAT
GGCCCAAGCACTGTTATAAACGCACCATGGATGAAGTCAAGGACATTACCGTCACACTTAGTTTTGATGGAGGTTTGGAT
ATAGAACTCTTCACATCCGCACTCTTCATAAAAACAGAAACTACAAAAGGACCTGCTGTCTGCTTAGCGGTGAATCGTGT
TGACGATTCGTCTAAGGCAATCCTAGGTATGTTTGCCCAGACCAACATCAATGTTGGGTATGACTTGCTAAGTCGTGAGA
TAGCCATGGATCCGATTCGTTGTGCCTGATAAAGTACGCAGCTTGTTAAATTGATTAGGAGCATGGCGTTATTGGACGCA
TTGATTCATGCGTGGTTGTTTTAGTTTATTGGTTATGTTACCAATTTGCATCTTCACGGCTGTCTTAGTTTACTATTGAT
GACTGCTGAAATGGACCTGCTACTTCGTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis