Browse Element(s) Details


Os.54930.1.S1_at

Description gb:AK107120.1
DB_XREF= gi:32992329
TID=Os.54930.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B04, full insert sequence.
FL= gb:AK107120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4299410/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54930.1.S1_at--160--2871Chr07:25752553..25752577 (25 bp)
AAGGTATTCCCCATGGAGTTGGCTC
LOC_Os07g42994
Os.54930.1.S1_at--1114--2271Chr07:25752373..25752397 (25 bp)
AAATGCTGGGCATGCGGTCAACCTT
LOC_Os07g42994
Os.54930.1.S1_at--346--7651Chr07:25752301..25752325 (25 bp)
GGGAGTCACCGAACCTTTGAACGAT
LOC_Os07g42994
Os.54930.1.S1_at--1024--5311NONE
GAAGGTGTAGCTTCCGTCGACGGCA
NONE
Os.54930.1.S1_at--98--1271Chr07:25752001..25752025 (25 bp)
AGATAGGTCTCTCCTCGTGAGCATC
LOC_Os07g42994
Os.54930.1.S1_at--69--1551Chr07:25751982..25752006 (25 bp)
AGCATCTTCGTGTGGTACTGGTACA
LOC_Os07g42994
Os.54930.1.S1_at--621--3031Chr07:25751927..25751951 (25 bp)
AATCCATCCTCGACTATCTGGTGTA
LOC_Os07g42994
Os.54930.1.S1_at--1090--8611Chr07:25751909..25751933 (25 bp)
TGGTGTATCTTCTGGCACGGTGCAA
LOC_Os07g42994
Os.54930.1.S1_at--275--2651Chr07:25751850..25751874 (25 bp)
AAGCAAACGGCTGCCAGTCAATCGT
LOC_Os07g42994
Os.54930.1.S1_at--1034--7851Chr07:25751774..25751798 (25 bp)
GGTATTTCGGCCAGTTTGTGATCCT
LOC_Os07g42994
Os.54930.1.S1_at--949--971Chr07:25751718..25751742 (25 bp)
AGGATCACCCAGTTAGGCAGGCCGA
LOC_Os07g42994
Target Sequence 
AAGGTATTCCCCATGGAGTTGGCTCATAGACTGAAGAGACATCTAGGTGAGAGTTCTCGATTAGTAGTGATAAGAAATGC
TGGGCATGCGGTCAACCTTGAGAAGCCCAAGGATGTGTGCAGGAACATCATTGAGTTTTTCCAAGAGGGAGTCACCGAAC
CTTTGAACGATGAGAAGGTGTAGCTTCCGTCGACGGCAGATAGGTCTCTCCTCGTGAGCATCTTCGTGTGGTACTGGTAC
ACAAACTGGTAAAGGCTTGCACCATCCAACAAATCCATCCTCGACTATCTGGTGTATCTTCTGGCACGGTGCAACCCCGA
GCGGTGTGAAGAAGAATCGAGTTTCGGAAAGCAAACGGCTGCCAGTCAATCGTGCCTGTGCCATCTCTCTCTCTCTCTCT
TACCGTGTAAAATTAACTTAATTAGGTATTTCGGCCAGTTTGTGATCCTCTTGTTCACGCAAGCATGCATGATGCAACAG
AGGATCACCCAGTTAGGCAGGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis